Clone FMO08578 Report

Search the DGRC for FMO08578

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:85
Well:78
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5388-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08578.5prime Sequence

521 bp (521 high quality bases) assembled on 2010-06-10

> FMO08578.5prime
CAGTCGACATGCCTCCTGTTGAAGTGAGCATACGCCAAGGAGTTGCGTTT
TTGGGCTTGTATGTGCTGCTCCTGGCTGCTTTGGTGCGTCCCCAGATGAA
CTTCAGCATATTCGTGGACTCGTTCTTCCTGCAGGTCAATCACTCGGTGG
TAATGGTGCTGAGCTACCGGTTTGATTCCTATATGGCGATGGCCGCCGCA
CCACTCAGTGCCGTTACGGTGTTTGCCCTTTCCAAGTGGAACGAACGTTG
CGAGAATCCCTCCTCCAGGAAGCTAGTGATCATGGGCGTGACATGCTTGT
ATGTCTTGGTGCTGGTGGCCAATGTCCTGGCCAATGGAATAGTGGTTCAG
CAGGCGTTGATCCGCTTCGATCAATGTCCGTATCGGGCGTGGTATATGTA
CAGCCAGATGGCCATGTCCTTTATCAAATCCTCGATTGCAGAAGTCCAGG
AAGTTTTCACCGGACGGCCTCAACGTCGGTCCCGACTTATATATCGTTTG
CATGCAAGCTTTCTAGACCAT

FMO08578.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5388-RB 1324 CG5388-RB 155..649 9..503 2475 100 Plus
CG5388-RA 741 CG5388-RA 155..649 9..503 2475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22337125..22337619 503..9 2475 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:27:34 has no hits.

FMO08578.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:37:02 Download gff for FMO08578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5388-RA 142..647 1..504 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:26 Download gff for FMO08578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5388-RA 147..649 1..503 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:45 Download gff for FMO08578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5388-RA 147..649 1..503 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:45 Download gff for FMO08578.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22337125..22337626 1..503 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:26 Download gff for FMO08578.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18162847..18163348 1..503 99   Minus