Clone FMO08580 Report

Search the DGRC for FMO08580

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:85
Well:80
Vector:pMK33-CFH-BD
Associated Gene/TranscriptGpb5-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08580.5prime Sequence

533 bp (533 high quality bases) assembled on 2010-06-10

> FMO08580.5prime
CAGTCGACATGTTGGCGGATAGTGCAACTTTGACTTTAGCTATCTTTGTA
GGTACGTCTGTTGTGCTTGTTTCGGTTTCATCTTCAAGTTTGTCGGAAAT
TAAGCCGATGAACAACGGACATATCGTGACGCCTTTGGGATGCCATCGTC
GTGTATACACGTATAAAGTGACACAGTCCGATCTTCAAGGACACGAGTGT
TGGGACTATGTAAGCGTTTGGTCGTGTTGGGGACGATGCGACTCAAGCGA
AATTTCCGATTGGAAGTTTCCTTACAAGCGTTCGTTCCATCCTGTTTGTG
TCCACGCCCAGCGGCAGCTGGTAGTAGCTATCCTAAAGAATTGTCACCCT
AAAGCAGAGGACAGCGTAAGCAAGTACCAGTACATGGAGGCAGTGAACTG
TCACTGCCAGACGTGCTCCACACAGGATACCAGCTGCGAAGCTCCGGCCA
ATAATGAAATGGCTGGGGGCAGCAGGGCAATCATGGTAGGCGCCGATACC
AAAAACTTGGACTATGCAAGCTTTCTAGACCAT

FMO08580.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Gpb5-RA 657 CG40041-RA 31..537 9..515 2535 100 Plus
Gpb5-RC 734 CG40041-RC 131..614 32..515 2420 100 Plus
Gpb5-RD 697 CG40041-RD 79..577 9..515 2405 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23311861..23312344 32..515 2420 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:19:23 has no hits.

FMO08580.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:59 Download gff for FMO08580.5prime
Subject Subject Range Query Range Percent Splice Strand
Gpb5-RA 46..562 9..524 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:23 Download gff for FMO08580.5prime
Subject Subject Range Query Range Percent Splice Strand
Gpb5-RA 31..547 9..524 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:00 Download gff for FMO08580.5prime
Subject Subject Range Query Range Percent Splice Strand
Gpb5-RA 31..547 9..524 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:00 Download gff for FMO08580.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 23311778..23311800 9..31 100 -> Plus
2L 23311861..23312354 32..524 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:23 Download gff for FMO08580.5prime
Subject Subject Range Query Range Percent Splice Strand
2LHet 167293..167315 9..31 100 -> Plus
2LHet 167376..167869 32..524 99   Plus