FMO08589.5prime Sequence
914 bp (914 high quality bases) assembled on 2010-06-10
> FMO08589.5prime
CAGTCGACATGTCGCACCTGGTGATGAGGCGACGGATTCTGCTTATGGTT
TTGCTATTTGCAGGTCCACTACGAAACGCACCTTTCGGCGGTGCACAGGT
GGCGATAGCGACATCACCAACAACTGCTCGTGACCGTCAAATTCCGCCGG
AGTGGGACCGAAACTGGAAGTTGGATCCGGACTGGGATTTCGCTGGAAGC
GAGGGCAGGGAGTCGGTCGCGCCGATGACGTCACGCACCTTGGACAACTT
TTACCCTTTCGATGGCGGAAATGCCCCGCCGAAAACCAGTGAAACGGAAA
TGGATAACCAATTCGGAGATAGCTATCTCGACCCGTATCCTACGCTGTTC
GGTCGCCAGTGGCACCTCCAGCATCGCAGCAAGCAGCTGCAGGTGCAGCA
CAAGTGGCAATCTCCGGTTCCTCCACTTGCGGAAGTCAAGGCTAAGAGGG
ATCCCGCCAACTGGCCACCCGACGACGAGGAGCCACCGCTTACGTACCCC
TACGCCTACACCTTGCCCTGGAAACGAAAGGAGGTTCCGGACTCACTCCG
ATATATGCCCTCGATCAGTGCTGGAGCCATGACCAATCTGGGCGGCTTTT
TCAACCGCCTGGAAGCGAACCTGCGCTTCGCGGAGCAATCGCAACTGGGT
GAGTCGGAGACGCGTATGCTGGAGGGTAAACACCCGCACCCACTGCACCT
GCCGCCCGTGCCGCCCGACGCTCCGGAGGATTCCGAGCAGAAGCATGAGC
ACGACCGGAAGACATCGAAGCTCCTGCAGGCCCTGCGCAGCTACAGGCCC
TCCCAGAAGATCCGATCGCTGGTGTCGCGCAATCCGCAGGGATACCGCGG
CTCCCAGTTCATTGATCCCAGCTACATGTGGCTGGGTCTGGGCAAAGCAA
GCTTTCTAGACCAT
FMO08589.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15082-RB | 1932 | CG15082-RB | 916..1803 | 9..896 | 4425 | 99.9 | Plus |
| CG15082-RA | 1170 | CG15082-RA | 154..1041 | 9..896 | 4425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18832169..18832682 | 61..574 | 2570 | 100 | Plus |
| 2R | 25286936 | 2R | 18832789..18833112 | 573..896 | 1605 | 99.7 | Plus |
| 2R | 25286936 | 2R | 18831246..18831302 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:38:02 has no hits.
FMO08589.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:40 Download gff for
FMO08589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15082-RA | 1..891 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:42 Download gff for
FMO08589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15082-RA | 144..1041 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:26 Download gff for
FMO08589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15082-RA | 144..1041 | 1..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:26 Download gff for
FMO08589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18831236..18831300 | 1..63 | 93 | -> | Plus |
| 2R | 18832172..18832681 | 64..573 | 100 | -> | Plus |
| 2R | 18832790..18833112 | 574..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:42 Download gff for
FMO08589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14718741..14718805 | 1..63 | 93 | -> | Plus |
| arm_2R | 14719677..14720186 | 64..573 | 100 | -> | Plus |
| arm_2R | 14720295..14720617 | 574..896 | 99 | | Plus |
