FMO08593.5prime Sequence
593 bp (593 high quality bases) assembled on 2010-06-10
> FMO08593.5prime
CAGTCGACATGGTGTTGCCGAGCAAAAAGTATAAAACCGACTACACGGAG
AACTCCTATCGTGCCCACATGAAGCTGACGATAAGAAACCTACAATATGG
TGACTTTGGCAACTATCGATGCATCTCGAAGAACTCGCTGGGGGAAACGG
AAGGCTCCATACGTGTTTACGAAATACCTTTGCCATCCACACCATCCAAG
CAGGTTACCCACACCACCGTCGAGTCCAGGGAGAACAATATCATACCCTC
ATCACGCAACGACACAACGAAATCCCTGCAAACGGATGTGGGATATGCCA
TGAAGAACGATTTATATCCAGGCTCGGCCTCCTCGTCATCTTCGGGAGGC
AGTTCCTCGGCGGCCTCGTCCTCCTCCTCGATGCAGACCTCGGCATTGCC
AGGAGGAGTGGCGGGAAATAGTCTATCATCGATGGGCTCCAAAGGATCCT
TGGCGATAGGCAAGAGCACGTTCTACACAGAACGACCACCGAATGAGTAC
GCCGCCTCGTCAGTGGCTGGCCTGCTGCTTCATAAAGCATTGCTGTTCGG
CTCTGGAATCTATCTGACCCTGCTTGCAAGCTTTCTAGACCAT
FMO08593.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34391-RE | 4735 | CG34391-RE | 1359..1925 | 9..575 | 2820 | 99.8 | Plus |
| CG34391-RD | 2139 | CG34391-RD | 1359..1925 | 9..575 | 2820 | 99.8 | Plus |
| CG34391-RB | 882 | CG34391-RB | 102..668 | 9..575 | 2820 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5439190..5439471 | 235..516 | 1410 | 100 | Plus |
| 3L | 28110227 | 3L | 5436522..5436632 | 61..171 | 555 | 100 | Plus |
| 3L | 28110227 | 3L | 5437712..5437775 | 171..234 | 320 | 100 | Plus |
| 3L | 28110227 | 3L | 5439530..5439589 | 516..575 | 285 | 98.3 | Plus |
| 3L | 28110227 | 3L | 5436260..5436312 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:19:17 has no hits.
FMO08593.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:34 Download gff for
FMO08593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34391-RC | 721..1296 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:22 Download gff for
FMO08593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34391-RB | 57..632 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:57 Download gff for
FMO08593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34391-RB | 97..672 | 1..579 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:57 Download gff for
FMO08593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5436255..5436312 | 1..61 | 93 | -> | Plus |
| 3L | 5436523..5436632 | 62..171 | 100 | -> | Plus |
| 3L | 5437713..5437775 | 172..234 | 100 | -> | Plus |
| 3L | 5439190..5439471 | 235..516 | 100 | -> | Plus |
| 3L | 5439531..5439593 | 517..579 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:22 Download gff for
FMO08593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5429355..5429412 | 1..61 | 93 | -> | Plus |
| arm_3L | 5429623..5429732 | 62..171 | 100 | -> | Plus |
| arm_3L | 5430813..5430875 | 172..234 | 100 | -> | Plus |
| arm_3L | 5432290..5432571 | 235..516 | 100 | -> | Plus |
| arm_3L | 5432631..5432693 | 517..579 | 95 | | Plus |
