FMO08595.5prime Sequence
875 bp (875 high quality bases) assembled on 2010-06-10
> FMO08595.5prime
CAGTCGACATGAACGGAGTAACTTATTTTGTGCTACTTCTTAGCTCTACT
TTGTTAGCTCTAGGTGGAGTTCAAAGTAAGCCCATGGGCAATGTCATCGA
TTTGGACAAGTATTTCGAGGAGGCAGACCTTAATTCCCAGGAGCGAGTTG
TTGGCGGTTACGATGTGCCAGAGGATGAATATGTTCCCTACCAGGTGTCC
ATGCAGTTTCTTACCCGCAGTGGAAAGATGCGACACTTCTGTGGTGGATC
CCTGATAGCCCCAAATCGCGTCCTTACCGCTGCCCACTGCGTCAATGGCC
AGAATGCCAGTCGAATTAGCGTAGTTGCTGGGATTAGGGATCTCAACGAT
AGCTCCGGCTTCCGATCGCAGGTGCAGTCGTACGAGATGAACGAGAACTA
CCAGGAGCTGGTGACTAGTGACATTGCCATCCTCAAGATCGATCCGCCCT
TTGAGCTGGACGAGAAGCGTGTGTCCACCATCGACGTCAGTGGATCGGAC
ATGGTAGGTGCCGATCAGGAGGTTCTCCTCACCGGATGGGGTTCTGTCTT
CCACTTTGGCACAGGTCCTTTCGCCAAATATCCCACTGTACTCCAGAAAC
TCGACTACAAGACACTGAGCAATTCCAAGTGCAAGGAGACGATGACCCAG
CTGACGGACACAGAGATCTGTGCCTTGGAAAGGTTTGGCAAGGGTGCCTG
TAATGGCGATTCTGGCGGTCCTTTGGTGATGAAGAGTGGTGAGTCCTATA
AACAGGTGAGCGTCGTCTCCTATGGAACTGCATTCTGTGCCTCGAACAAT
CCTGATGTCTATACCAGAGTGTCCATGTTTGACGGTTGGATTAATGAAAG
AATGGTCGCAAGCTTTCTAGACCAT
FMO08595.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12256-RA | 935 | CG12256-RA | 1..850 | 8..857 | 4220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12225581..12226183 | 705..103 | 3015 | 100 | Minus |
| 3R | 32079331 | 3R | 12225367..12225523 | 857..701 | 740 | 98.1 | Minus |
| 3R | 32079331 | 3R | 12226245..12226339 | 102..8 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:21:03 has no hits.
FMO08595.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:53 Download gff for
FMO08595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12256-RA | 1..856 | 8..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:02 Download gff for
FMO08595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12256-RA | 1..856 | 8..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:44 Download gff for
FMO08595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12256-RA | 1..856 | 8..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:44 Download gff for
FMO08595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12225361..12225519 | 705..863 | 97 | <- | Minus |
| 3R | 12225582..12226183 | 103..704 | 100 | <- | Minus |
| 3R | 12226245..12226348 | 1..102 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:02 Download gff for
FMO08595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8051083..8051241 | 705..863 | 97 | <- | Minus |
| arm_3R | 8051304..8051905 | 103..704 | 100 | <- | Minus |
| arm_3R | 8051967..8052070 | 1..102 | 97 | | Minus |
