FMO08596.5prime Sequence
1109 bp (1011 high quality bases) assembled on 2010-06-10
> FMO08596.5prime
CAGTCGACATGGAAATTGTTATAAGGTTTCTGCAAAGCATAGCACCCGTC
TTCTTGGCCCATGGGATTGTCGGCATTATCGCCTTCTGCGTGAGGCTGTA
TATGCAGGGCGGAAAGTTTAGGAAGCAGACCGATGAGACGGGAAAAGTGG
CCATCGTTACTGGCGGAAATACGGGTCTTGGCAAGGAGACCGTGATGGAG
TTGGCCAGGAGAGGAGCCACCGTTTACATGGCATGCCGCAACAAAGAAAA
GGTGGAGAGAGCGCGCAGGGAAATCGTAAAGGAGACCGGAAACTCCAATG
TCTTCTCACGGGAGTGCGACTTGTCGTCCCTGGATTCCATTCGAAAGTTT
GCAGAGAACTTCAAGAAAGAGCAGAGGGTGCTGCACATCCTCATCAACAA
TGCTGGTGTGTTTTGGGAACCGCATAGATTGACGAAAGAGGGATTCGAAA
TGCACCTGGGTGTAAACCACATCGGACACTTCCTGCTAACCAACCTACTG
CTCGGCGTGCTGGAGAGGTCGGCTCCTAGTCGGGTGGTGGTGGTCGCCAG
CAGGGCCCACGAACGGGGTCAGATTAAGGTGGATGACATCAACAGCTCTG
ATTTTTACGACGAGGGAGTAGCCTACTGCCAAAGTAAGCTGGCCAACATA
CTCTTCACCCGCGAACTGGCCAAGCGGTTGGAGGGAACGGGCGTGACGGT
CAACGCCCTTAATCCTGGAATAGCAGACACGGAGATAGCCAGGAACATGA
TCTTCTTCCAAACAAAGTTTGCTCAAACCATTTTGAGGCCGCTCCTTTGG
GCCGTGATGAAGACGCCTAAGAACGGGGCCCAGACCACCTTGTATGCTGC
CTTGGATCCTGATCTCGAAAGAGTGTCGGGTCAGTACTTCAGCGATTGCG
CTCTGGCTCCGGGTAGCTCCCGCTGCCCTCGACGACCAGATGGGCCCAGT
GGTTGTGGGGCGCAGTCCGAGAAGTGGGCGAAAATGCGCTGGCCAAGCTT
TCTAGACCATTCGGTTGGCGCCGCGGGTCCAGGTAGGGGTCAATCATATT
CATATCTATCTAATCCACTAGCTTAGAGATCTGGTATGACTATGCTGATT
CTCACAATA
FMO08596.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30495-RA | 1355 | CG30495-RA | 44..1024 | 9..991 | 4820 | 99.6 | Plus |
| CG30495-RB | 1939 | CG30495-RB | 319..1311 | 9..991 | 4690 | 98.4 | Plus |
| CG2065-RB | 1233 | CG2065-RB | 186..322 | 102..238 | 250 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7657734..7658150 | 359..775 | 2085 | 100 | Plus |
| 2R | 25286936 | 2R | 7657410..7657675 | 93..358 | 1330 | 100 | Plus |
| 2R | 25286936 | 2R | 7658220..7658426 | 776..985 | 900 | 98.6 | Plus |
| 2R | 25286936 | 2R | 7657213..7657299 | 9..95 | 435 | 100 | Plus |
| 2R | 25286936 | 2R | 7664040..7664176 | 102..238 | 250 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:33 has no hits.
FMO08596.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:36:51 Download gff for
FMO08596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30495-RA | 14..1001 | 1..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:29 Download gff for
FMO08596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30495-RA | 40..1027 | 1..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:37 Download gff for
FMO08596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30495-RA | 40..1027 | 1..996 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:37 Download gff for
FMO08596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7657412..7657675 | 95..358 | 100 | -> | Plus |
| 2R | 7657209..7657298 | 1..94 | 95 | -> | Plus |
| 2R | 7657734..7658150 | 359..775 | 100 | -> | Plus |
| 2R | 7658220..7658432 | 776..990 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:29 Download gff for
FMO08596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3544917..3545180 | 95..358 | 100 | -> | Plus |
| arm_2R | 3544714..3544803 | 1..94 | 95 | -> | Plus |
| arm_2R | 3545239..3545655 | 359..775 | 100 | -> | Plus |
| arm_2R | 3545725..3545937 | 776..990 | 98 | -> | Plus |
