FMO08609.5prime Sequence
1140 bp (1031 high quality bases) assembled on 2010-06-21
> FMO08609.5prime
CAGTCGACATGGGACCGCCGAAAAAATCGAGAAAGGATCGCAGCGGTGGT
GACAAGTTCGGCAAAAAGCGGCGTGCCGAGGATGAGGCTTTCACCCAACT
GGTGGACGACAATGATAGTTTGGATGCCACAGAATCGGAAGGAATTCCGG
GTGCAGCGTCCAAGAATGCGGAGACCAATGACGAGCAAATCAATACGGAT
GAGTACGGCGCCAAGGATTACCGGTCGCAGATGCAACTGCGTCCGGATCA
CGGAAATCGACCACTTTGGGTTGCGCCCAATGGTCACGTCTTCCTGGAAT
CATTCTCGCCCGTCTATAAGCATGCCCACGATTTTCTTATCGCCATTTCG
GAGCCCGTCTGCCGACCCGAACACATTCACGAGTACAAACTTACCGCATA
CAGTTTATATGCCGCCGTTTCGGTGGGACTGCAAACCCATGACATTGTGG
AATACTTGAAGAGATTGAGCAAGACCAGCATTCCCGAAGGCATCCTTGAG
TTTATACGACTCTGCACCCTATCCTATGGCAAGGTCAAGCTGGTCTTGAA
GCATAACAAGTACTTTATCGAGTCACCACATCCTGAGGTGCTGCAAAAGT
TACTTAAGGATCCAGTGATCCAGAAATGCCGCCTCATACGCAGCGAGGGA
GAGGATTTCATTCAGGGAACCCTGGACGGCAAGGCTATTACTCAATTCGG
GACCAAACTGCCGCCAGGAGCCACGGACAAGCCGACACCAGATCCTGCAG
CAGCCGCAGGAGCTGATGGAACCACAGCAGTGCCAGAAGATATCACAGAC
TTCTACGAGAAGATCGACAAAGAGGAGGAGGACGAGGATGAGCCAATCTG
AAGACCGTGTCGTTTGAGTGGCCCAGGAGAAGATCGAAGTGATTCAGAAA
CGATGCATCGAGATAGAGCATCCTCTATTGGCGGAGTACGATTTCCGCAA
CGATACCAACAATCCAGACATCATATTGACCTCAACCCGCTGCCGTTCTG
CGTCATATCAGAGAGAGTCTGCGCAGATGTTTGCAATGAGAGCCCGCTCT
GGTGTATGTGCTCTGTGGTGCAAGAAATTCCTAGTGGGGTCACAGCATGC
TGCACGTACGAAGAGGGCACTAGTTCTGGTGCACGTGGGT
FMO08609.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hay-RB | 2511 | CG8019-RB | 67..1206 | 9..1128 | 5175 | 98 | Plus |
| hay-RA | 2604 | CG8019-RA | 160..1299 | 9..1128 | 5175 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10631519..10632467 | 60..1004 | 4530 | 99.5 | Plus |
| 3L | 28110227 | 3L | 10631408..10631460 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:37:50 has no hits.
FMO08609.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:24:14 Download gff for
FMO08609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hay-RB | 67..1218 | 9..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:29 Download gff for
FMO08609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hay-RA | 160..1311 | 9..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:13 Download gff for
FMO08609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hay-RA | 160..1311 | 9..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:13 Download gff for
FMO08609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10631408..10631459 | 9..60 | 100 | -> | Plus |
| 3L | 10631520..10632619 | 61..1140 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:29 Download gff for
FMO08609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10624508..10624559 | 9..60 | 100 | -> | Plus |
| arm_3L | 10624620..10625719 | 61..1140 | 97 | | Plus |
