FMO08610.5prime Sequence
1113 bp (931 high quality bases) assembled on 2010-06-21
> FMO08610.5prime
CAGTCGACATGTCCGTGGACTTTATACTGCCCAATCGCAATAAGATCCAA
ACGATTGCCTATGCGAGTGCCAGCAAGAAGTATGTGCCCGGTGGATCGGG
ATCCACCCTGAGCTCCGGATCGGTATCGGCATCGGGTGCCGACTTGCAGA
GCTGGCGACGACCCAAGCCCAGGACCTCCGGAAAGGTGAAGTTCGATGAT
AAATCCCCGCTGACTGCCAGTTCGGTGCTAAAAAATGCCAATGGAAATGG
CCTGGGAACTGGAGGCAAGTCACCTCTCAAATCGCTGGCCAAAAGGAACT
CGCGTTCAATTCTCAAGCGGGAGATCATCGATCTGGACGACGAGGATGGC
GAGGAGCAGGAGGATCAGCTCTGCGAACATCTGGAATGGTCCGCCGCCCA
ATCTCTGGTCCAAATGAACTCCTCCAAGCAGGAAAAGCAACGGCGAGCAG
GAACTACAGGATCTCCTGCAACTGTGGCAGCGCCAGTCTCCGCCTCAGTG
TCGCTGCGCCGTCCAGTGGGCAGAGCTCCGGCGGAGGATGGCAAGGTGAT
TTTCTATGCCCCGCCCGCCAGCGCCAGTGGATCTCCGCGTCAGCCGGAGC
CGGTGGCCTTGAAGAGGGAGCGCGAGCGGGACAAGGAGCGCGAGAGGGAA
AAAGAACGCGAGCGGGACCGCATGCGGGAACAACAATTGGTCGCGGCGAC
GGCAGCGGCATCGATTTACCGGGGTCGCAGCGTGAGGAACGGAGCGGCCA
CGATCTGCTCTCCTGTCACAGAGTCTGCGCCCTGATCCGCATGCGTGGTC
ACATCATGAGCAGACAGAGCACTGCGCTCCCGGAATCAGAGATACGACAG
CGCTCCAGCGATCGCCCAGTCGACATCCGGTCTTGCACACTCATACGACT
GATGGTGCTCTCGAGGGCAACATGTCGCTCTGAGCGCGACTCGACAACTC
CACTGAATCACTGCTCTCTCGATCAGTTGAGATGGGCAGCCATCCGACAA
CGCACTGCCTGGCTCAAGTCCAACTGTGAGGAGACAGGACAGGGCGCTGG
ACACTGATGAGACCAGACCGGCCAATCAACAGCTGCAGAGGCCCTGACGC
AGAACGGCACTGA
FMO08610.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12605-RE | 2770 | CG12605-RE | 775..1672 | 9..881 | 3865 | 97.2 | Plus |
| CG12605-RD | 7025 | CG12605-RD | 890..1787 | 9..881 | 3865 | 97.2 | Plus |
| CG12605-RA | 4340 | CG12605-RA | 809..1706 | 9..881 | 3865 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3961572..3962061 | 498..9 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 3959661..3959899 | 734..496 | 1195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:58 has no hits.
FMO08610.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:24:15 Download gff for
FMO08610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-RA | 801..1624 | 1..817 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:41 Download gff for
FMO08610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-RA | 801..1624 | 1..817 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:33 Download gff for
FMO08610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-RA | 801..1624 | 1..817 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:33 Download gff for
FMO08610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3959565..3959896 | 499..817 | 96 | <- | Minus |
| 3L | 3961572..3962069 | 1..498 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:41 Download gff for
FMO08610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3959565..3959896 | 499..817 | 96 | <- | Minus |
| arm_3L | 3961572..3962069 | 1..498 | 99 | | Minus |
