FMO08617.5prime Sequence
1166 bp (1063 high quality bases) assembled on 2010-06-21
> FMO08617.5prime
CAGTCGACATGCCGCTGCTGAGCAAATGCTTCCCCTGCTTCAAATTCAAG
CGCGAGGAGGTGATCGACAAGCTGGACTACAGTAATACCCCGCTAACGGA
TTTCCCAGAAGTTTGGCAGCACGAGCGAACCCTGGAGGAGCTTTACCTGA
GCACCACAAGATTGCAAGCTCTGCCACCGCAATTGTTTTATTGCCAAGGA
TTAAGGGTGCTTCACGTAAACAGCAACAATTTGGAGAGCATTCCACAGGC
CATTGGCAGTCTGCGACAGCTGCAGCATCTGGATCTCAACCGGAATCTTA
TTGTCAATGTGCCCGAGGAAATCAAGTCCTGTAAGCACTTAACCCACTTG
GACCTGAGCTGCAACAGTTTGCAACGTCTTCCCGATGCCATTACCTCGCT
AATTTCGCTGCAGGAGCTGCTGCTAAACGAGACCTATCTAGAATTCCTAC
CAGCCAACTTTGGCCGATTGGTAAATCTGAGAATTCTGGAGCTGCGACTC
AACAATCTCATGACACTTCCCAAATCCATGGTGAGACTAATCAACCTACA
GAGGCTGGACATTGGCGGTAATGAATTTACCGAGTTGCCCGAAGTTGTCG
GCGAGTTGAAGTCCCTTCGCGAACTATGGATCGACTTCAATCAAATACGT
CGTGTTTCGGCCAACATTGGAAAGCTACGCGATCTGCAGCACTTCGAGGC
CAATGGCAACTTGCTGGACACTCTTCCCAGCGAGCTGAGCAACTGGCGCA
ATGTGGAGGTACTATCTATATGCTCCAACAGCCTGGAGGCCTTTCCCTTC
AGCGTGGGCATGCTGAAGTCCCTGGTGACATTCAAGTGCGAGTCAAACGG
TTTGACAGAGTTACCCGACAGCATAAGCTACTTGGAACAGCTCGAGGAAC
TAGTATTAAGCCACAACAAGCTTATACGCCTACCTAGCACAATTGGGATG
TTGCGTAGCCTTCGCTTTCTGTTCGCCGATGATAATCAACTACGACTGCT
ACCAGATGAGCTGTGCAGCTGTCAGCAGTGAGTGTGCTTAGTTGTGGCGA
ACATTAGGTGTCCGCTCTACCACAAACATTGGCAACTGACCAAGATGAAG
TACTCATGGGGTGAATACTACTAATGCATGCCAGTCAATGTAATCTATAT
CCTCATTCGAGTTGCT
FMO08617.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lap1-RB | 3841 | CG10255-RB | 414..1549 | 9..1135 | 5290 | 98.3 | Plus |
| Lap1-RA | 4587 | CG10255-RA | 397..1532 | 9..1135 | 5290 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14937049..14937565 | 587..1100 | 2235 | 97.7 | Plus |
| 2R | 25286936 | 2R | 14936547..14936836 | 298..587 | 1450 | 100 | Plus |
| 2R | 25286936 | 2R | 14936146..14936298 | 9..161 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 14936355..14936490 | 162..297 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:21:49 has no hits.
FMO08617.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:24:08 Download gff for
FMO08617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lap1-RA | 398..1526 | 9..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:36 Download gff for
FMO08617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lap1-RA | 397..1525 | 9..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:15 Download gff for
FMO08617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lap1-RA | 397..1525 | 9..1129 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:15 Download gff for
FMO08617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14936146..14936298 | 9..161 | 100 | -> | Plus |
| 2R | 14936355..14936490 | 162..297 | 100 | -> | Plus |
| 2R | 14936547..14936836 | 298..587 | 100 | -> | Plus |
| 2R | 14937050..14937599 | 588..1129 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:36 Download gff for
FMO08617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10823651..10823803 | 9..161 | 100 | -> | Plus |
| arm_2R | 10823860..10823995 | 162..297 | 100 | -> | Plus |
| arm_2R | 10824052..10824341 | 298..587 | 100 | -> | Plus |
| arm_2R | 10824555..10825104 | 588..1129 | 96 | | Plus |
