FMO08618.5prime Sequence
1045 bp (839 high quality bases) assembled on 2010-06-21
> FMO08618.5prime
CAGTCGACATGAATAGGTTTTGGATAATCGCTTTACTTTTAGGATTACAG
CAAACAAAGCCAATAAATGGACAATCGGATGTGCTGGTGAATCTAGTGGT
GCCGCGATATGTGGAGCGCGGATCGAGTGCCACCTTCAAATGCACGCACA
ATGTCCGGCCGGAAATACTGTTCAAGGTTACATGGCTGAAGGTTGACAAG
GGCAAGTTCTTTGAATTCATAAACGGACGAAATCCGCCATTCCGTAACTC
AACCATCGAGGGAGCCGAAATCGACTGGGACAATTCCAACGAGCAGCAGG
TGACACTGAAGGATGTCCAGTTCGATCTATCCGGCCAATTCTACTGCGAG
GTCTCCACGGACACCCCCATTTTTACCAAGGCCAGCGCCGATGAGCTGAT
GAGCGTGTTCTTGCCCCAGACGGGTCCGCCCACCATTAAGTTTCGCAAGC
GAACGCCCTTCGCGGTGGGCGAGAAACTTTTCGCCCTGTGCAACACCACC
CGCGGCCGGCCTGCGCCGCACATCACGTGGCTAATCAATGGGAAAAAGGT
GGAGGACAGGTACGTGCGCACCCACCACGTGTTCTCCTTCAATGGGAAGC
ACCAGCACCAGCGTCGCACGCAGCAGCAGCAGCAGACGCAGCTGAGTCAG
CAGCAGCTGCAGCAGCAGTATTTCCAGCAGCAGTACTTCAACCAGTACCA
TCAGCAGTATCACATCCCCGTTGGCCAATTCATGGATCGCTACGACAAAA
GCCTACGATGGCAGAGACACGACGAGGTCCGATTTTGCGACACTAGGCCG
CCACGACTGCACATCGTGACGTGCACACTGCTGGATCCAGGTACGATCAA
CACAAACTGATAACGACAGATAACAGACGACGAGACGCCATACAAGCTGA
CTCACCTAAGGGTCGCTAGTCATACAGCGCTCACACTGACTACATGACGT
CCGACGTCACAGGAGACGGGGGCGCGTCGCCAGAGTTCACCTACATCAGC
TGCAGCTGACGTCACGAGGAGAACAATCGTGGAATGCCCATCAAG
FMO08618.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-VII-RD | 6138 | CG42242-RD | 533..1286 | 9..762 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26662114..26662329 | 762..547 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 26662989..26663128 | 551..412 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 26663217..26663352 | 411..276 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 26666780..26666891 | 178..67 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 26663598..26663698 | 275..175 | 505 | 100 | Minus |
| 3R | 32079331 | 3R | 26681377..26681434 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:19:32 has no hits.
FMO08618.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:24:07 Download gff for
FMO08618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VII-RD | 533..1294 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:40 Download gff for
FMO08618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VII-RD | 533..1294 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:09 Download gff for
FMO08618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VII-RD | 533..1294 | 9..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:09 Download gff for
FMO08618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26662100..26662327 | 549..772 | 98 | <- | Minus |
| 3R | 26662992..26663128 | 412..548 | 100 | <- | Minus |
| 3R | 26663217..26663352 | 276..411 | 100 | <- | Minus |
| 3R | 26663598..26663696 | 177..275 | 100 | <- | Minus |
| 3R | 26666782..26666891 | 67..176 | 100 | <- | Minus |
| 3R | 26681377..26681434 | 9..66 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:40 Download gff for
FMO08618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22492504..22492613 | 67..176 | 100 | <- | Minus |
| arm_3R | 22507099..22507156 | 9..66 | 100 | | Minus |
| arm_3R | 22487822..22488049 | 549..772 | 98 | <- | Minus |
| arm_3R | 22488714..22488850 | 412..548 | 100 | <- | Minus |
| arm_3R | 22488939..22489074 | 276..411 | 100 | <- | Minus |
| arm_3R | 22489320..22489418 | 177..275 | 100 | <- | Minus |
