FMO08619.5prime Sequence
1173 bp (1049 high quality bases) assembled on 2010-06-21
> FMO08619.5prime
CAGTCGACATGTTGGCCCTTGTCGTTTTTCTGATTGCCAGTTGTTTGACC
ATTCAAACGGCAGCCACTACGACACCAAGTCCAGCGGTCACCGAAGCTGG
TCACCCATCTCCTGGAGGTTCGCAAGGTCAAGAGGAGCCAGGAAACAGCT
CCTCAACGGAACTACCGGACTACTGCGATCCCTCCTTGTGCCACAAAGAA
CTCAAACATGTGGCTTGCAACGCATCAATCGAACTGCACGACAAGTGCTC
TCTGGACGCTGAGCTCATAGTGATAAGCCCAAAGGTGGAAAGATTCCTAT
TAAGGCGATTTAATGAGTTGAGGGATAGCGTGGCCAAAGGAGGGTTCAAC
GGACTGAGTCCTGCCAGTCGGATGGGCACCTTGAAGTGGAACCCGGAACT
GGCCTACCTAGCTGAATTCAATGTGAGGGATTGTGTCCTGAGGCACGACG
AGTGCCGGAACACGAAGTTCACGCAAAACGCTGGCCAGACGGTTGGGTAT
CGAGGCATTAAAGGAAAATTGCCAGAGTTGGAGGATATCCTTAGGGATAT
CATAGGGGTGTGGTTGCGGGAAAAATCCAGAACTTCGATGGTGAACATCA
TGAAGTATGTCGAGCAGGAATCTCAGTCGCCGAAGTACAACTTTTTACAG
ATCGTGCTGGAGAACGCTGAATCCGTGGGCTGTGCCATCGTTCAGCAGTC
CCGGCATGGCTGGATTCAGACGTTTTTCGCGTGCAACTATGGCCACGCCC
CGGTTGTGGGCTCGCCCGTCTACGAGCCCGGGAAAAAGGCGGCGGAGTCC
TGCAAGACCGGAGCGAACCCGAAATATGCACATCTCTGCGCCGAGTCCGA
GGTCTACGAGAAGGTACGCCGAAAGCAGAAACGCGTCCAGTCCCGAAATT
AAAACTAGAACTCTTGGAAAACGGGACTTCGTCATGCTCAACGGCGAAAC
GCTGATGGAACGCCGCCAGCTGAAGTGGGGCACCAGCACCAGCAGCGATG
AGCAGCAGCAGCGCCTGCGCCGAAGAGAGCAGCTGCACCTGAGAGCTGCA
GCCACTCCGCGTCGACGGAGCACGCAGGACCATTCAGGATCCCCCGGTGG
AGTGAAAGGCTCCCTCTGCACAACGCTGAGGACTCCCTTTCGAATCCCGG
TAGGCAAAAGCTCTGCCAGCCTC
FMO08619.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42564-RA | 1587 | CG42564-RA | 5..1129 | 9..1113 | 5095 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6375020..6375416 | 231..627 | 1985 | 100 | Plus |
| 3R | 32079331 | 3R | 6376383..6376781 | 626..1018 | 1695 | 98.5 | Plus |
| 3R | 32079331 | 3R | 6374479..6374701 | 9..231 | 1115 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:47 has no hits.
FMO08619.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:24:05 Download gff for
FMO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10284-RA | 1..1098 | 9..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:18 Download gff for
FMO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42564-RA | 3..1102 | 7..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:43 Download gff for
FMO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42564-RA | 3..1102 | 7..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:43 Download gff for
FMO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6374479..6374700 | 9..230 | 100 | -> | Plus |
| 3R | 6375020..6375414 | 231..625 | 100 | -> | Plus |
| 3R | 6376383..6376863 | 626..1089 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:18 Download gff for
FMO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2200201..2200422 | 9..230 | 100 | -> | Plus |
| arm_3R | 2200742..2201136 | 231..625 | 100 | -> | Plus |
| arm_3R | 2202105..2202585 | 626..1089 | 96 | | Plus |
