FMO08622.5prime Sequence
1145 bp (1033 high quality bases) assembled on 2010-06-21
> FMO08622.5prime
CAGTCGACATGATGAACAGCCTAAAGAAATTGCCCGTGCGCATGCTGGCT
AACGCTGCACGTCAGCAAAGTGCTGCGATGTCCTCGGCAACTGGTCTCCC
CCCACCCCTCACCTTTCTCACCGACGATGAGAAAATGATGAAGGAGACTG
TTGCCAAACTGGCTCAGGAGCAGATCCAGCCCTTGGTGAAGAAAATGGAC
TTTGAGCACAAATTCGATCCCTCCGTGGTGAAGGCGGTTTTCGAGAACGG
CCTGATGGGCATTGAGATCGACACCGAGCTGGGAGGCAGTGGCTGCAACT
TCATGACCAACATCGTCGTGGTGGAGGAGCTGTCCAAAATCGATCCTGCC
GTCGCCGCTTTTGTGGACATTCACAACACACTGGTCAACTCGCTGATGAT
CAAGTTCGGCAATGCCGAGCAGAAGGCGAAGTATCTGCCTAAGCTGGCCC
AGGAGTACGCCGGTAGCTTCGCCCTGACCGAACCCGGTGCAGGATCCGAT
GCCTTCTCCCTGAAGACCGTCGCCAAGAAGGACGGCTCCCACTACGTAAT
CAACGGCTCCAAGATGTGGATCTCCAACTCTGATGTGGCGGGAGTCTTCC
TGATCTTTGCCAATGCCAAGCCAGAGGATGGCTACCGTGGCATTACCACC
TTCATTGTGGACCGTGAGACTCCCGGTCTGATCGTGAACAAGCCGGAGGA
CAAGCTGGGCATCCGTGCCTCTGGAACCTGCCAGCTCACCTTCGACAACG
TGCGTGTGCCCGAGGAGAACATCCTGGGAACCTTCGGCCATGGCTACAAG
TATGCCGCCGGCTTCCTGAACGAGGGTCGCATCGGTATTGCTGCCCAGAT
GGTGGGCCTGGCCCAAGGAACCTTCGACGCGACCATTCCGTACCTGCTGG
AGCGCAAGCAGTTCGGTGATGCCATCTATACTTCCAGTCGATGCAGCATC
AGATCGCCACGTGGCCACGGAGATCGAGGCCGCCCGCTTGATGACCTACA
TGCTGCACGTCTGCAGGAGCAAGGGTGTGGCCCTCCCGAAGGAGGCGGGC
CATGGGCCATTACTACGCCCTCTCGAAGGTGGCCCAAGAGGCGGCGATCA
AGTGCTCTAACTGGAATGGAAGGGGTGGGCTTCACCGGTGAATTA
FMO08622.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3902-RA | 1585 | CG3902-RA | 119..1248 | 9..1141 | 5185 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18894355..18894835 | 630..150 | 2405 | 100 | Minus |
| 3L | 28110227 | 3L | 18893457..18893965 | 1141..630 | 1895 | 94.4 | Minus |
| 3L | 28110227 | 3L | 18897944..18898050 | 150..44 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:26 has no hits.
FMO08622.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:24:13 Download gff for
FMO08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3902-RA | 108..1131 | 1..1021 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:58 Download gff for
FMO08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3902-RA | 111..1134 | 1..1021 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:28 Download gff for
FMO08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3902-RA | 111..1134 | 1..1021 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:28 Download gff for
FMO08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18893571..18893965 | 630..1021 | 98 | <- | Minus |
| 3L | 18894356..18894834 | 151..629 | 100 | <- | Minus |
| 3L | 18897944..18898049 | 45..150 | 100 | <- | Minus |
| 3L | 18898140..18898183 | 1..44 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:58 Download gff for
FMO08622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18886671..18887065 | 630..1021 | 98 | <- | Minus |
| arm_3L | 18887456..18887934 | 151..629 | 100 | <- | Minus |
| arm_3L | 18891044..18891149 | 45..150 | 100 | <- | Minus |
| arm_3L | 18891240..18891283 | 1..44 | 93 | | Minus |
