FMO08627.5prime Sequence
1179 bp (1047 high quality bases) assembled on 2010-06-21
> FMO08627.5prime
CAGTCGACATGGCATTTGTCAGCAATGCAATTGTTGGCCCGGAGAATTGC
AAATCGGTAACGCCACCCATTCCGTATCCCAAGTCTGTGGCCTTCATCAT
CAGCAATGAGTTCTGCGAGCGATTCAACTACTATGGCATGCGCACCATCC
TGGTGCTGTACCTCACCAACAAACTGGGCTACAATGAGGAGACGGCAACC
GTACTTTTTCACACGTTCACCATGCTGGTCTACATCTTTCCCCTGATCGG
AGCTCTTATCGCCGATGGCTGGCTGGGAAAGTACAAGACGATATTATATC
TATCGCTGGTGTATAGCCTAGGGGCTATGGTGGTATCCTTTGGTGCCGTT
CCGCTATCGGGGATGCCAACTAAAGCTGTGACCGTTGTGGGACTCCTACT
AATTGCGATCGGGACCGGTGGAATCAAGCCATGCGTTTCCGCCTTTGGTG
GCGACCAGTTCTCGCTGCCCGCGCAAAGTTTTCAGCTGGCAAAGTTCTTC
TCGTTGTTTTACTTTGCCATTAACGCAGGATCTTTGATTTCGACCACGTT
CACCCCGATCTTGAGGGCAGACGTCCATTGTTTTGGCGATCAGGATTGCT
TCTCGCTGGCCTTTGGCGTGCCCGCCATCTTGATGATCTTCTCGGTGATA
ATCTTCATGGCCGGCAAGCGGTTGTATAGGTGTCAGCCACCTGCTGGCAA
CATGATCTTCGGGGTGTCGCGTTGCATTGCGGATGCGTTCAAGGGATGGC
AAAAGCGCAGGCACTCGGAGCCGATGGAGAGCTTTCTGGACTATGCCAAG
CCGACGGTGGGGTCGCGAATGGTGCAGAGACCAAGTGCCTGGGCAGAATC
CTACGACTCTTTCTGCCCTTCCCCGTCTTCTGGGCCCTCTTTGACCAGCA
TGGCTCGCGATGGACCTTCCAGGCCCACGAATGGACGGCACGTGTTGGGG
TTTCAGATAAGCCCGATCAGATGCAGTAGTCAATCCCTGCTCAACCTCGG
TTTCTGCACTATTCGACTATATCATTAACCTGCTCTGGCACGTGTGGATA
GCGACCACTGCGAAGCTCACCTAGCTTCTTTGGCAGCCTTAGGATTTTCT
CTCAGCGGTCTGAATGAAATTGACAGCTGCCTACGAGCCACCATAAGCGA
ATGACCCACTGCAAATACATGCATGCTGT
FMO08627.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yin-RC | 2565 | CG44402-RC | 153..1312 | 9..1141 | 5080 | 97.2 | Plus |
| yin-RB | 2574 | CG44402-RB | 153..1321 | 9..1141 | 4980 | 96.5 | Plus |
| yin-RD | 2670 | CG44402-RD | 308..1417 | 59..1141 | 4830 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3864335..3865013 | 1043..374 | 2885 | 98.1 | Minus |
| X | 23542271 | X | 3865070..3865298 | 373..145 | 1145 | 100 | Minus |
| X | 23542271 | X | 3865358..3865440 | 144..62 | 415 | 100 | Minus |
| X | 23542271 | X | 3866512..3866565 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:06 has no hits.
FMO08627.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:23:39 Download gff for
FMO08627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yin-RC | 144..1286 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:51 Download gff for
FMO08627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yin-RC | 144..1286 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:15 Download gff for
FMO08627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yin-RC | 144..1286 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:15 Download gff for
FMO08627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3864245..3865013 | 374..1119 | 96 | <- | Minus |
| X | 3865070..3865298 | 145..373 | 100 | <- | Minus |
| X | 3865358..3865439 | 63..144 | 100 | <- | Minus |
| X | 3866512..3866571 | 1..62 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:51 Download gff for
FMO08627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3758278..3759046 | 374..1119 | 96 | <- | Minus |
| arm_X | 3759103..3759331 | 145..373 | 100 | <- | Minus |
| arm_X | 3759391..3759472 | 63..144 | 100 | <- | Minus |
| arm_X | 3760545..3760604 | 1..62 | 93 | | Minus |
