FMO08629.5prime Sequence
1125 bp (1025 high quality bases) assembled on 2010-06-21
> FMO08629.5prime
CAGTCGACATGTTGGGACTACAACGTTTTGCCGGCAGTTTTGTCACCCAG
TTGTACCGCCGTGCAGCCTTCAGCAGCAGTGTCCGGGCAGCGGGCATTCC
CGTGGCGCCCACTGGAGCACAATCGGATGCAGTGGAGCCGGAAGCACGCG
CGCCGGCTGTGGAGGAGGCGGCCAAAAAGCCCAGGGGCCACATGGTAGCC
GCTGCTTTCGAATCCCTTAGAAACGACGATCCCAAAGATGAGAGCAAAAG
CCAAGCCTCCAGCAAGATCGATGAGCGTATCATCAACGCAAAGACAGTCA
ATGGACTGCTAACTATCACGGAGAACAACAATGGCTTCTCGAGGAAGCAT
GCCCTCAGAATTGTCTCCATACTGGCCGAGTGGAGCACCTTGAATCGAGT
AAAGATCTCGGAATTCGAGAACGACACAAGGTTCCTACGTATTTGCCGGA
TGTTGGGCCGGACGGTTCCCAAAAATAATAATGCTAACAACAAGGACCTT
GGTGACAATGGGACGGCCAAGCGGATTTCCGGCTTCCGAACAGATGACCT
AAACACGGTGCTTGGCGTAGCTGGTGACGATGAGGCCGCTAAGCTGATAG
CTAGCATCAGTCTGCCCCAGATGGTCAAGGTGATGAGCACCCTGGCCCAG
CGGAAGAGGCGTAGTACTCCTCTCTTGCGCTCCCTGGCCTTTAATATCAG
CAGCGCGTCGGAATCGCTGGATTTAAAGCAAGCGGGGGATGTGCTGTTCG
CTATGTCCACGTTGAATTTCCAGGATTCTGTTCTAGGCGCTAAAGTGTGT
GCGGATGTGCAATCGGCGCTGCCTAAGAATGTGGAGAAGTCTGCCGTTGT
GGGATCCATTATCACCAGCCTGGGCATTTTACGATACCGGGATTTGGATA
TCTTGGAATCACTTACGCAGTGGCTTTTAAGAATAGTGAAATCTGTCGCC
CCCAAGATCTCAGTGCCTATTTCCTTACATCGGCCTGCTGACTTCAAAAG
CGCTCAATTGGAGGAAGTGAGCAAAAGCTAGTAAGTCTATTGTTCGCGAG
GATTTACAGCAATCCGGTGCTTGGCTTGTGTGGTCCTACAGTTTGGTCTA
GTAAAACCGCATGCTCGTTTGATGC
FMO08629.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13850-RB | 1876 | CG13850-RB | 78..1191 | 9..1107 | 5125 | 98.1 | Plus |
| CG13850-RA | 1876 | CG13850-RA | 78..1191 | 9..1107 | 5125 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22409712..22410423 | 897..186 | 3560 | 100 | Minus |
| 3R | 32079331 | 3R | 22410485..22410663 | 187..9 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 22409486..22409649 | 1055..897 | 525 | 95.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:34:36 has no hits.
FMO08629.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:23:37 Download gff for
FMO08629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13850-RA | 82..1155 | 9..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:10 Download gff for
FMO08629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13850-RA | 78..1151 | 9..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:36 Download gff for
FMO08629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13850-RA | 78..1151 | 9..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:36 Download gff for
FMO08629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22410486..22410663 | 9..186 | 100 | | Minus |
| 3R | 22409464..22409648 | 898..1073 | 92 | <- | Minus |
| 3R | 22409712..22410422 | 187..897 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:10 Download gff for
FMO08629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18235186..18235370 | 898..1073 | 92 | <- | Minus |
| arm_3R | 18235434..18236144 | 187..897 | 100 | <- | Minus |
| arm_3R | 18236208..18236385 | 9..186 | 100 | | Minus |
