FMO08631.5prime Sequence
1131 bp (975 high quality bases) assembled on 2010-06-21
> FMO08631.5prime
CAGTCGACATGGCGGACCTAATACATTTGGGAAACATTGATGTTGTCATC
CAGAAAGATAAGCCCGGATCGCCAACGGGCTGTTCGGATGATGGGAATCT
TGCGGGGCTGGGTGGCATGACCGGATTGGGTGGCATAATGGCACCTGGCG
GCATCGACTTGGGTGACTTGGCTCAGGAATTGGATCACGATGAATTCGAT
GGACCACATATGCTGAATGGTGAACGTCCAGCGATTATTGCTCCTCCGGA
AAGCGAATGGTACCATGGACGACTCGATCGCTACTCTGCAGAGTCTCGCC
TACGCGGAAGCAGTAAACTGGGCAGCTATTTAGTTCGCGAAAGTGACCGC
AAACCTGGCTCCTATGTTCTGAGTTATTATGGCCGCACCGGCATAAATCA
TTTTCGGATTACAGCTGTGTGCGGAGACTTCTATATCGGAGGACGACAAT
TCATTTCCTTAAGCGACTTGGTTGGTTACTATACCTCATGTAGTGATCTA
CTGAAACGCGAACGCTTGGCCATACCAGTTGCTCCGCCGGAGCCAGTTAA
TGATAAGAAACGCGTCGTAGCCATCCTGCCTTACACAAAAATGCCAGAGA
CCGATGAACTGAGTTTCCAGAAAGGTGATATCTTTTTTGTACACAATGAC
ATGGGCGATGGCTGGTTGTGGGTGACTGCCCATCGTACGGGCGAGCAGGG
AATGATATTCAGAGAACTTGTTGACGATCTGGATGTATCTATCGATCCAA
ATACGGTGTTTCCCTGGTTCCATCCCAACTGCACCAAAAACGAAGCCGTC
GATATGTTGGTTAAAGCTGGACCAGGAAGTTTCCTCGTTCGCCCAAGTGA
CACTCACCGTGGGATTTACTCTCTATTCTTTCATATAAACAATCAAACCC
AACGCTTTCGTATTGAAAAGAAAGGCGTGCGCTATTTAATGGGGCGGTCG
TACATTCGAATGCTTGGAATGCCGGTAATAATCGTATCCAAACACCAATT
GGTGGAGGGCCACTCCCCTGAACCATCCCGGTGGCCATGGGCATTCCAGC
CCCGAGTCCATCACTAAAGGTTGTGGCAAAGCCTGCTGAAAAATCTAGCT
CACATGCGCCGATGGTCTGACCAATCTGGGT
FMO08631.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vap-RF | 3845 | CG9209-RF | 772..1859 | 9..1097 | 4820 | 96.9 | Plus |
| vap-RE | 4340 | CG9209-RE | 990..2077 | 9..1097 | 4820 | 96.9 | Plus |
| vap-RC | 3543 | CG9209-RC | 470..1557 | 9..1097 | 4820 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16002886..16003296 | 816..406 | 2055 | 100 | Minus |
| X | 23542271 | X | 16003713..16003925 | 221..9 | 1065 | 100 | Minus |
| X | 23542271 | X | 16002562..16002714 | 968..815 | 595 | 96.8 | Minus |
| X | 23542271 | X | 16003529..16003643 | 333..219 | 575 | 100 | Minus |
| X | 23542271 | X | 16003376..16003451 | 407..332 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:08:09 has no hits.
FMO08631.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:22 Download gff for
FMO08631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vap-RB | 385..1408 | 9..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:55 Download gff for
FMO08631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vap-RC | 470..1493 | 9..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:39 Download gff for
FMO08631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vap-RC | 470..1493 | 9..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:39 Download gff for
FMO08631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16002497..16002712 | 817..1033 | 91 | <- | Minus |
| X | 16002886..16003295 | 407..816 | 100 | <- | Minus |
| X | 16003377..16003449 | 334..406 | 100 | <- | Minus |
| X | 16003529..16003642 | 220..333 | 100 | <- | Minus |
| X | 16003715..16003925 | 9..219 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:55 Download gff for
FMO08631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15896530..15896745 | 817..1033 | 91 | <- | Minus |
| arm_X | 15896919..15897328 | 407..816 | 100 | <- | Minus |
| arm_X | 15897410..15897482 | 334..406 | 100 | <- | Minus |
| arm_X | 15897562..15897675 | 220..333 | 100 | <- | Minus |
| arm_X | 15897748..15897958 | 9..219 | 100 | | Minus |
