FMO08633.5prime Sequence
1129 bp (1025 high quality bases) assembled on 2010-06-21
> FMO08633.5prime
CAGTCGACATGCGCTGCCTGGCATTGAGCGCAGTGTTTTTGTGCCTGACT
CTGGCCGGGCACTTTCATTTGTCAGATGCCTACAAGAACGAGGTACAGAT
CACCCCGGATCCGCTAGACGCGGTGGAGACGACAACCAAGAAGTCCAGCT
GGTTTGGTGGATTCAAGAAGTTCTTTGGCAGCGATGGCACTACAACTACC
ACCAGCACGATTGCTCCACCGGTGGTCACCAGTCCGAAATCGGTGGTGGT
TACACCCACGGCAGCCAACAAGCCACCGCCACTGGTCATCTCGCATGCTC
CATTGATGCCGCTGGGACCGCGACCCGATACGCCGGGATCGTCACCTTTC
GGCGCATCCCAAAATCCTCAAACGCCACCTCAGTGGCCATCGAGCACCAG
AGCAACGCCATCGCATCCATCGCAACCCTCGCAGCCATCTCAGCAGCCAC
CTCTGCCTGGTTTCGCCTCCTATCGGCCACAGAAACCGCAGCCGAATAGC
TACGATCTTAGCTACGGTGGCGGTCCACAACCGGCACCAGCAGGAACAGG
ACGTCCTGGTTTTGGACTGGGCATAAGCAGCACTACGAGCACCACGACCA
CCGCGAAGCCCATCACCAGCACCACAGGTAAGACACCGCAGCAGAAGGAG
GATTTCCCGGCACTGCCAGGACCTCGGCGGCCGTCCCAAAAAGAGGACTT
CCCAGCTCTGCCCGCGCCCAAAACTCCACCAGGCTCGCCAACGCCTACAC
CGGGATCTCCTTCGGCTTGGCAATCACCGTTGCCAACGCCCCAGCATCCT
GTGCATCCGCCCACTAAAGGCTACTTCGGCGGCCACGCCTACCCCGACAC
CAACGCCTTCGTTCTCTTCCTCGGTAACGCCCACTCCCGCTCACGGATCG
TCTGTGGGACCACACAAGACGGAGTGGAGGTGGTGGAGGCCGCACCACTA
CTGTGCGACCCGGTTTCAGTCGTCGGCTCCTCGGTTGCCACTGATGACGA
AATCCGCCAGCTGACCGAAGCTACTGTTCACCAGAAAAGCAACAGCCAGA
TCCGTAACATCCTAGTGATCTGCCTGGACCCACGCGTTCATCTACAGCGA
AATGAAGCACCCAATTCACTTTGACTGTG
FMO08633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2145-RB | 1988 | CG2145-RB | 123..1250 | 9..1129 | 5105 | 97.4 | Plus |
| CG2145-RA | 2045 | CG2145-RA | 180..1307 | 9..1129 | 5105 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10927710..10928729 | 74..1089 | 4500 | 97.8 | Plus |
| X | 23542271 | X | 10927578..10927644 | 9..75 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:06:25 has no hits.
FMO08633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:19 Download gff for
FMO08633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2145-RA | 172..1275 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:44 Download gff for
FMO08633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2145-RA | 172..1275 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:44 Download gff for
FMO08633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2145-RA | 172..1275 | 1..1099 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:44 Download gff for
FMO08633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10927570..10927644 | 1..75 | 94 | -> | Plus |
| X | 10927712..10928740 | 76..1099 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:44 Download gff for
FMO08633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10821603..10821677 | 1..75 | 94 | -> | Plus |
| arm_X | 10821745..10822773 | 76..1099 | 97 | | Plus |
