FMO08636.5prime Sequence
1033 bp (942 high quality bases) assembled on 2010-06-21
> FMO08636.5prime
CAGTCGACATGGGACCAATATGCCGCATCCTGGGCTGCTCCTTTCTGCTG
CTCATCGCCGGATTAGTGCCGCACCATGCCTCCAGAGTCGTCGGATTGGA
ATCAACTTGCAGCCAGGAACAATTCCGCTGCGGCAACGGAAAGTGCATTC
CGCGAAGATGGGTCTGCGATCGGGAAAACGACTGCGCCGATGGAAGCGAT
GAATCGACGTCCCAGTGCCGGGGCCTGTGTTCCTCCTTGATGTTCATGTG
TAAAAATGGTGAGCAGTGTATACACCGGGAATTCATGTGCGATGGCGACC
AGGACTGTCGCGACGGATCCGACGAATTGGAATGTGGCAATAGGACATGT
CGCTCCGACGAGTTCACCTGCGGCAATGGACGTTGCATTCAGAATCGCTT
CAAGTGCGACGATGACGACGATTGTGGTGACGGATCGGATGAGAAGAACT
GCGGGGAAAAGGCGAAATGCGGATCCAATTTCTTCGCTTGCAAAAGTGGA
CCGTGCATTCCCAATCAATGGGTTTGCGATGGAGATTCAGACTGCAGAAA
TGGCGAAGATGAAATGCAAAACTGCACCGTCAGTCTATTGAACTTCTGCC
AAGCGGGTGAGTTCCAGTGCTCGGACAGAATCACCTGCCTGCACAAATCG
TGGGTTTGCGATGGCGAGGCCGATTGTCCCGATGGCGAGGACGAATCGCA
GTCCAACTGCCTAAAAGTGTCCTGTCGTCCGGATCAGTTCCAATGCAACG
ATCAAAGCTGCATCGCTGGCCATCTGACCTGCAACGGGAAGAGGGACTGT
GCGGATGGCAGTGATGAAATTATGTGCGACATTAGTGCGACGCCAAGGAC
TTGCAATGCACCACTGAATTCGATTGCGGCGGTGGTCTGTGCATCCCGAA
TGCCAAGGTCTGCAACCGCAGGAATGATTGCTCGAATGGCCGAGGCTGAG
CCGGCGTAAGTGTGCTCACGAATGCTCCTCGAGATGGCGGCCTGTATCAC
CATGGTTGATCTGGAGATGGTTACGGCTCGGAC
FMO08636.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR2-RF | 4145 | CG31092-RF | 300..1331 | 7..1028 | 4680 | 97.7 | Plus |
| LpR2-RB | 3476 | CG31092-RB | 233..1264 | 7..1028 | 4680 | 97.7 | Plus |
| LpR2-RG | 4186 | CG31092-RG | 930..1869 | 99..1028 | 4220 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25707825..25708214 | 955..566 | 1795 | 98.5 | Minus |
| 3R | 32079331 | 3R | 25709291..25709517 | 566..340 | 1135 | 100 | Minus |
| 3R | 32079331 | 3R | 25713841..25713962 | 220..99 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 25713537..25713656 | 339..220 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 25718398..25718490 | 99..7 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 25747127..25747229 | 446..344 | 260 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:59:28 has no hits.
FMO08636.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:23:50 Download gff for
FMO08636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RF | 205..1170 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:13 Download gff for
FMO08636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RB | 227..1192 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:07 Download gff for
FMO08636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RB | 227..1192 | 1..964 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:07 Download gff for
FMO08636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25709291..25709517 | 340..566 | 100 | <- | Minus |
| 3R | 25713537..25713656 | 220..339 | 100 | <- | Minus |
| 3R | 25713842..25713961 | 100..219 | 100 | <- | Minus |
| 3R | 25718398..25718492 | 1..99 | 95 | | Minus |
| 3R | 25707814..25708213 | 567..964 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:13 Download gff for
FMO08636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21533536..21533935 | 567..964 | 97 | <- | Minus |
| arm_3R | 21535013..21535239 | 340..566 | 100 | <- | Minus |
| arm_3R | 21539259..21539378 | 220..339 | 100 | <- | Minus |
| arm_3R | 21539564..21539683 | 100..219 | 100 | <- | Minus |
| arm_3R | 21544120..21544214 | 1..99 | 95 | | Minus |
