FMO08640.5prime Sequence
1163 bp (1086 high quality bases) assembled on 2010-06-21
> FMO08640.5prime
CAGTCGACATGCATTTCTGGATTGACAAGCGCTCACAGCAGTGCGGATTT
GGACGGTCTCGCGTGGCGGCCTCCTTGTCGCACGCTGGCAGCGGTCTCAG
CTATGGCCATCCGCCACGAAGGACCAAGTCCACCAGCTGCAGCAACAGCA
CTGGACAGTCAATGCCACCGGTGCATCGATCTCTGCCGCAGACGCCGTAC
GATATGCATCAGCCCGGCACCAGTCGCCAGTCGCAGTCGTCATATGGCAA
CAACAATTCCCTGCATGCCCAGCAGCAGCAACATTCCAGCAGCGGTGGAA
CCAGCAATAACAATAACTTGACTGCCACCGGCACAACAACAACTGCCAGC
AACAATAACCATGCCAGCGGAATAGCCTCATCGGCAGCAGTCCTCACCGG
AAGCGGAACCATTGTTCCGCTGGTGGCACGAGGATCGCACTACAATCACC
ACGGCAACACGCGTTATCAGCCAAGGACGCAGCAGCAACTGTTGCAACAG
CAGCAGCAACAGCCACACCAGCACCAACAGCAGCAACATCAGCAGCATCA
GCAGCAGCAGCACTACAGCTACCACCATCCGCAATTCGGCAACATGGCTG
TGCCCATGAGACACTACGATGCACATCAGCAACAGCAACAGCAGCAATAC
TCGGGCAACGTCTACGCTGACGATGCCTACAGCGCCTATCACCACACCGC
CCATCACCAGCACAGCAGCAATCACTCGACCAGCGGCAGCAACAACCAGC
GTCAAGCGTCCGCCTACGCCACGCCACGTCGCCACAATTCCAGCAGCAAC
ATGCGACACTCGACGCCAGCAGCAGCGGCAACCACAACCACAGAGACACC
AAGTGTCGCCAGTCCAGCGGCAGCAGTGGCTGCTGCACCTGCCACAATGC
ATAGCAGCCACTTGCAGCAGCACCATCATGCACTGCTGCAGCACGCGGAC
TCGCAACTGTTGCCCAGCCATTTGAAGTGCGGCATGTGCGCCTCCGCTGG
TGCTGGTGTCCGTTTTCGTGCAGGAACAAAGTTCTACTTCGAACAACCAA
GGGCACTGGGCTGGAAGGTGCTGATCTTCTGCACCTTTCGCTCTTTAGAC
CGGCTGCTGAATCAGCCTGTGCGGCAATCGAAAGCCTCTTCTCGAGTCCA
ATGCTCGATGGCC
FMO08640.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10713-RA | 2534 | CG10713-RA | 510..1676 | 4..1163 | 5310 | 97.7 | Plus |
| rn-RG | 5014 | CG42277-RG | 2968..3055 | 494..584 | 190 | 82.6 | Plus |
| rn-RE | 5014 | CG42277-RE | 2968..3055 | 494..584 | 190 | 82.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13430279..13430942 | 667..4 | 3305 | 99.8 | Minus |
| 3L | 28110227 | 3L | 13429782..13430199 | 1088..668 | 1835 | 97.9 | Minus |
| 3R | 32079331 | 3R | 7275212..7275298 | 584..498 | 195 | 81.6 | Minus |
Blast to na_te.dros performed 2014-11-28 20:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7197 | 465..943 | 445 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6654..7110 | 472..943 | 278 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2973 | 271..648 | 261 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..7210 | 270..747 | 237 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..3002 | 109..855 | 232 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2683 | 547..928 | 207 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2667 | 537..898 | 198 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1591 | 702..767 | 137 | 73.1 | Plus |
FMO08640.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:11 Download gff for
FMO08640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10713-RA | 508..1676 | 1..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:50 Download gff for
FMO08640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10713-RA | 508..1676 | 1..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:43 Download gff for
FMO08640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10713-RA | 508..1676 | 1..1163 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:43 Download gff for
FMO08640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13429697..13430199 | 668..1163 | 94 | <- | Minus |
| 3L | 13430279..13430944 | 1..667 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:50 Download gff for
FMO08640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13422797..13423299 | 668..1163 | 94 | <- | Minus |
| arm_3L | 13423379..13424044 | 1..667 | 99 | | Minus |
