FMO08642.5prime Sequence
1167 bp (1026 high quality bases) assembled on 2010-06-21
> FMO08642.5prime
CAGTCGACATGGGTCTGCGGGACACCATTCGTAACCTACGGCCGGCAAGT
CCCGGCCGGGAGAAGTCATCGGGCATCGAGCTGCAGCAGCGAAGTCCGCG
AGGTGCATGCCACCACAATCAGGTGGCCGCCGTCCAGGTCACGGAGCAAT
CATTACAGGTATGGCGCGCACTGCCAGCAGAGATTCGCCACGATCCCAGC
ATGGCCAGTTTTCAGATGGAGAACGAGAGAATCCATGGTTCCTCCGGCGG
CGCCACTGACGACGAGGATGAGGATGGATACGAGGAGGTGGATATGAAGA
ACGTCAGTCGCATTCAGGATGAGCCCGGCTCAAGCTTTGCCGGCTCCGAC
TTTCTGGACATCAAGAACAGGCCTGGTGATGAGAATGCCACCGACGATGA
GGTCACCACCCACTCCGATCACGAAGCGGCCAATGGTGGTCCGGGTAATG
CCAAATCACAGGCCCGCCGGATTCATCACAAATCCAAGCGTTCCAAGGAG
CAGCGACAGCGGGACAAATTGTGGAAACGGGGTGGACTACTTGTATTTTG
GATCCTGTCGGCAGTGGTGCTGATTTCGGTGGGCGAAAAGCATCTGCTGG
AGAAGACCATTGATGTGCCAATGGGCGAGGAGGGAAAGTTTTTCAAGCTG
CTCCAAAAACCCACTGGTGACTTCCGCTTGAAGATTCATGGCGCTTTTAG
AGAGCTCTCCACGCTGGATGCCCCCGAAAATGAGACTTTGAGCTTTGGAT
TTCTGACTGTGCAGCCACAGGTGTCCACTTACATTGGCGAGAATCACAGC
CAGGTGTTCCAGGATATACTTCCAGCGTGGCGTTTACCACTGCTCTCCGA
GGAGGAACTGATGCTGCGTGCTCCGGCTGTGACCACCAATCGCACCTACC
AGATGACTCAGGAGTTAGATGAAATGTTGGCTGGAAAGAACAGCGAATTT
CCGCTTGCATATCTATAGCGATGTGGAGGTGGATTTGGCCATTGTGTCTG
AACTTATATCCCTTGATAGTGAATGCCAGGACAGGGAGCATCTCTGGCTG
GGGTAATCCTGCCTAATCTCTATGCACTGCCTGTTGGGGACACTCTCGAA
GGAACCCTTGTGGACAGGAAGGTTCATTCTGTCCGGTGACAGCATCCAGA
CCCGTTTATGGATCGTC
FMO08642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hoe2-RA | 2888 | CG15624-RA | 108..1239 | 7..1140 | 5260 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4935509..4935911 | 639..237 | 2015 | 100 | Minus |
| 2L | 23513712 | 2L | 4936111..4936343 | 239..7 | 1165 | 100 | Minus |
| 2L | 23513712 | 2L | 4934888..4935188 | 1113..810 | 1100 | 93.1 | Minus |
| 2L | 23513712 | 2L | 4935262..4935435 | 813..640 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:14 has no hits.
FMO08642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:08 Download gff for
FMO08642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe2-RA | 103..1204 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:41 Download gff for
FMO08642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe2-RA | 103..1204 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:54 Download gff for
FMO08642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe2-RA | 103..1204 | 1..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:54 Download gff for
FMO08642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4935263..4935435 | 640..812 | 100 | <- | Minus |
| 2L | 4934895..4935185 | 813..1106 | 95 | <- | Minus |
| 2L | 4935509..4935910 | 238..639 | 100 | <- | Minus |
| 2L | 4936113..4936348 | 1..237 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:41 Download gff for
FMO08642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4934895..4935185 | 813..1106 | 95 | <- | Minus |
| arm_2L | 4935263..4935435 | 640..812 | 100 | <- | Minus |
| arm_2L | 4935509..4935910 | 238..639 | 100 | <- | Minus |
| arm_2L | 4936113..4936348 | 1..237 | 99 | | Minus |
