FMO08643.5prime Sequence
1167 bp (1052 high quality bases) assembled on 2010-06-21
> FMO08643.5prime
CAGTCGACATGACCATATCGGATTCGGAACTCGACAGCAGCAAGGGCATC
GACCTGACATTCAGGAGGAGAAGGAAGGCAGGTTCCGTCGCCTGCGAAGG
ATTTATCACCACGTACCATGAATACTGCAGGAACACTTCCATACATGGTG
TCCAATATCTTGGCGAGCAGGAGCGCCCCTTCCGCGAGCGCATCTTTTGG
CTGTTCGTGTTCCTGATCTCGATCTACGGCTGCTCCACGCTGATTCAAAG
TGCCTACACCAAGTGGACCGAAACGCCTGTGATCGTTAGCTTCGCGGAAA
AATCGACCCCCGTGTGGAACATCCCGTTTCCGGCGGTCACAGTTTGCTCG
GAGACCAAAAGGGTGCTAAAGCAGAAAGGAAAAGAGACCACTTATGCTGA
TCTTTACAGCCAGTTCAGCGAAGATATGCGAGCTTCGCGGGTGTTTAGGC
CCGAAAACGTTAGTGCCCTTGAGATGGAGGAGTTCCGCACCCTGCTGCAC
GTATGCAACACGCAGATCATTGAAGAGGACATACCCTTGATAGCCGGCGA
TGACTTGGACTACTTTGATGTTCTGCAGCGGATGCTGCCCCAGTTTGATC
GGTACTTCTTTTACTGCCGCTGGCTTAGTCGTTTCGGCGAGTGCGAGACC
TTCTTCCGAAAGACTCTTACGGAGGAGGGCATCTGCTATACGTTCAATGG
GCTGAGAGCCACTGAGATATACCGGGACGACACCTATCAGTATCAACACA
GCGGGGAGCCCCTGGAAATGGAAAATATTAGCTCGCAGCATACGGCCTGT
ACTCTGGAAACGGGCTATGCACTGGACAGCGATGTGGAGACCTTTCCGGC
TCGTGTCTTAAGTGCCGGAGCGCGATCTGGCATTTTCTTGGCCTCCAAAG
CTTAAGCAGAGTGGACTACGCCTGTCGAGGACTGTGCAAGGATTTAAGTA
CTGCTTCATGCGCCGATGACGTCCCGCAAGTTTCCAAACAGTTTGGGGCA
TTCCATGGGCAAGGAGGTGCTGATCGCATGAGCCCACATGATCACCATGT
CGTCGGTATAGCTGAGTACATCCAGTCGAGCATGCTCTCGCACGACGGTC
CCTGCGTTTTAGTTACGATCAAATGCCACTGGATGCTGCCACTCCGTGAC
CAGTGCGAGGTAGTCAA
FMO08643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpk-RA | 2518 | CG1058-RA | 83..1165 | 8..1076 | 4975 | 98.2 | Plus |
| rpk-RB | 2536 | CG1058-RB | 83..1183 | 8..1076 | 4795 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4646744..4647320 | 377..948 | 2625 | 98.6 | Plus |
| 3R | 32079331 | 3R | 4646063..4646330 | 8..275 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 4646575..4646679 | 275..379 | 525 | 100 | Plus |
| 3R | 32079331 | 3R | 4647395..4647509 | 948..1056 | 250 | 91.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:02 has no hits.
FMO08643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:07 Download gff for
FMO08643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpk-RA | 126..1215 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:57 Download gff for
FMO08643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpk-RA | 76..1165 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:35 Download gff for
FMO08643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpk-RA | 76..1165 | 1..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:35 Download gff for
FMO08643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4646576..4646678 | 276..378 | 100 | -> | Plus |
| 3R | 4646056..4646330 | 1..275 | 98 | -> | Plus |
| 3R | 4646746..4647320 | 379..947 | 98 | -> | Plus |
| 3R | 4647395..4647531 | 948..1076 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:57 Download gff for
FMO08643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 472298..472400 | 276..378 | 100 | -> | Plus |
| arm_3R | 471778..472052 | 1..275 | 98 | -> | Plus |
| arm_3R | 472468..473042 | 379..947 | 98 | -> | Plus |
| arm_3R | 473117..473253 | 948..1076 | 91 | | Plus |
