FMO08645.5prime Sequence
1140 bp (1036 high quality bases) assembled on 2010-06-21
> FMO08645.5prime
CAGTCGACATGTTCTATGAGCACATTATTTTGGCCAAGAAAGGCCCCCTA
GCCAGGATCTGGTTGGCAGCACATTGGGACAAAAAAATTACAAAGGCCCA
TGTATTTGAAACTAATATTGAAAAATCAGTGGAAGGGATTTTGCAACCAA
AAGTAAAATTAGCGTTGAGAACGTCTGGACATTTATTGCTAGGTGTTGTT
CGCATTTATTCCAGAAAAGCGAAGTATTTATTAGCTGATTGCAATGAAGC
CTTTGTCAAGATTAAGATGGCTTTTCGACCAGGCATGGTCGACTTACCAG
AAGGGCACAGAGAAGCTAATGTTAATGCAATAACACTCCCAGAAGTTTTT
CATGACTTTGATACAGCCCTGCCCGAATTAAACGATATTGATATTGAGGC
TCAGTTTTCTATAAATCAGTCCAGAGCTGACGAGATAACAATGAGAGAAG
ATTACGGTAGTTTGTCTCTTTCCTTACAAGATGACGGATTTGGTGATATA
GGCTTTGAAGCAGAAACGCCTGAAATTATACGATGCTCTATACCTTCAAA
TATTAATGATAAAATATTTGATAATGACGTTTTGGAAAATATTGAGTCTC
TGGATCCACATTCATTGGACGCCCATGCTGATATGCCTGGTTCTCGATTG
GATGGTGATGGGTTTGGAGATTCTTTTGGACAACCAGCCCTTTTTGAAGA
CGATCTTTTTGGTGATCCTTCTCAACCAGTTGAGCAGATTACAAAAGAAT
CTACTACTGTTCTCAACGCAGATGATTCTGATGAAGACGCCATTGATAAT
ATTCATAATGTCCCTTCGCCTGCAACCTCGCTCGTTAATTCGATTGAAGA
TGAGAAAGAGGAAAATAATTTAAATGGACATGCAAGTGTGTCCGAAAATG
TGCCAATGAATGAAATACGCTTGTTCAAACGAGGATGAGGATTTGCGTTA
GCTCCTTTAGATGTCTCATGTTGAAAGGCGTACAAAAGCCAACGCAAAAG
AAAACTTATTATTGACGAAATAAAAAATATTTTCTGGAGAGGAAATGAGC
CTCAGTAGCCGAACAATCTTGATAATTAACCAACCTGATAGCCACCACAA
AGATATGTATTGAGGACTGCAGGTCGAACTTTCCATACAT
FMO08645.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vtd-RB | 2527 | CG17436-RB | 88..1168 | 9..1082 | 5050 | 98.5 | Plus |
| vtd-RA | 2299 | CG17436-RA | 88..1168 | 9..1082 | 5050 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 27136944..27137237 | 265..558 | 1470 | 100 | Plus |
| 3L | 28110227 | 3L | 27136612..27136869 | 9..266 | 1290 | 100 | Plus |
| 3L | 28110227 | 3L | 27146395..27146574 | 682..861 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 27140119..27140242 | 558..681 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 27146627..27146819 | 861..1048 | 590 | 95.4 | Plus |
Blast to na_te.dros performed 2014-11-28 19:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 4232..4326 | 650..554 | 127 | 64.3 | Minus |
FMO08645.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:05 Download gff for
FMO08645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad21-RA | 94..1161 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:51 Download gff for
FMO08645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vtd-RA | 88..1155 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:29 Download gff for
FMO08645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vtd-RA | 88..1155 | 9..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:29 Download gff for
FMO08645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 27136612..27136869 | 9..266 | 100 | -> | Plus |
| 3L | 27136946..27137236 | 267..557 | 100 | -> | Plus |
| 3L | 27140119..27140242 | 558..681 | 100 | -> | Plus |
| 3L | 27146395..27146574 | 682..861 | 100 | -> | Plus |
| 3L | 27146628..27146842 | 862..1069 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:51 Download gff for
FMO08645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 2243664..2243921 | 9..266 | 100 | -> | Plus |
| 3LHet | 2243998..2244288 | 267..557 | 100 | -> | Plus |
| 3LHet | 2247454..2247577 | 558..681 | 100 | -> | Plus |
| 3LHet | 2253759..2253938 | 682..861 | 100 | -> | Plus |
| 3LHet | 2253992..2254206 | 862..1069 | 93 | | Plus |
