FMO08646.5prime Sequence
1161 bp (1047 high quality bases) assembled on 2010-06-21
> FMO08646.5prime
CAGTCGACATGGCCGCCCTTGAAAAGAACGCTTCGGAGAACTTCAAGCAA
GTGCAATTGAAGAAATTGACGGTTCCTTCCATGGAGGCAACAACAAAACG
CGCGGCCTTGGGCGATTTGCAGAATCGCGGCATAAGTCGTCCCATCGCAG
CGAAGGATGCGGCACAGAAAGACTCCAAGGATCTCAAGCTCACAGACGCC
CTGCGCAATGCCAAAGCTCGGGTGGACAGCCACTGGAAGAAACAGCCACT
GGGCAGCACCAATGGCAATGGCAATGGCGCCGTTCCGCCCAAGGTCAACG
AGGGGGGCGTGTCGGCGTTTTTGCGTTCGAATTCGGTGCGCAATCGCGTT
CCGACCAAGACCACTGTAGAACCCACTAAAGTTACAGTCAAGTCCAGTTC
TTCCGAGAACGTGAACGAGCCCACCTTAAAGCGCGAGGACAGCAATCTGT
CGAAGAAGTCGCTGACCAAACTGCGTGCCGCTTTGGCCAAACCCGTGATG
GGAGTTTCAGGAATTCGACGGGAACCAGTAGCTGTTTCCCGCAAAGAGGC
AGAGACCAAGAAGGAACTGCCAGAAACCAAGAAGGACTCACTGGAAGTGA
AAAAGGATGCGACCAGGATGCCCCTTATTAGGGGCAACAGTGCAGTCACT
ACGACCACATCTACGATGCCCACCACCATGTCCCTTTCCAGCAAGCGCTT
GGCTGGAATCGAGGACATTGATGCCAATGACAAGGAGAACCTGGTACTGG
TCTCCGAATATGTAAACGACATCTACGACTACTTGTATCAGGTGGAGCTG
GAGCAGCCCATTCACAACGATCACCTGGCCGGACAGAAAGAGGTGTCCCA
CAAGATGCGAGCCGTGCTGATCGATTGGATCAACGAAGTCCACCTGCAGT
TCCATCTGGCTGCAGAGACCTTCCAGCTGGCGGTGGCTATCATTGATCGC
TACCTGCAGTGTCAAGACACCAAACGCACGTACTTGCAATGGGTGGGGAG
TGACAGCACTCTTCATAGCCACCAAGTACGAGGAGCTGTTCCCGCCGGCA
ATCGGAGATTTCGTCTTCATCCCGGACGACACCTACACTGCCGGCAGATC
CGACGATGGAGCTGTCAATCTTCAAGCATCGACCTGATATCTGTCCGGCT
CCCCTGCGATT
FMO08646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB-RB | 2556 | CG3510-RB | 209..1350 | 9..1145 | 5385 | 98.5 | Plus |
| CycB-RA | 2633 | CG3510-RA | 302..1427 | 25..1145 | 5305 | 98.5 | Plus |
| CycB-RC | 2548 | CG3510-RC | 217..1342 | 25..1145 | 5305 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22804816..22805568 | 1126..378 | 3400 | 98.3 | Minus |
| 2R | 25286936 | 2R | 22805667..22805875 | 381..173 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 22805940..22806087 | 172..25 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:11 has no hits.
FMO08646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:17 Download gff for
FMO08646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RB | 262..1396 | 9..1139 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:50 Download gff for
FMO08646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RB | 209..1343 | 9..1139 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:28 Download gff for
FMO08646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RB | 209..1343 | 9..1139 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:28 Download gff for
FMO08646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22804831..22805564 | 382..1111 | 98 | <- | Minus |
| 2R | 22805667..22805875 | 173..381 | 100 | <- | Minus |
| 2R | 22805940..22806085 | 27..172 | 100 | <- | Minus |
| 2R | 22806274..22806291 | 9..26 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:50 Download gff for
FMO08646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18692336..18693069 | 382..1111 | 98 | <- | Minus |
| arm_2R | 18693172..18693380 | 173..381 | 100 | <- | Minus |
| arm_2R | 18693445..18693590 | 27..172 | 100 | <- | Minus |
| arm_2R | 18693779..18693796 | 9..26 | 100 | | Minus |
