FMO08650.5prime Sequence
529 bp (469 high quality bases) assembled on 2010-06-21
> FMO08650.5prime
CAGTCGACATGTCTTCGTTCTTCGATTGCTTCAATGATTTTCTGCAGAGC
GGCGGCAACTTAGTGCAGAATGTGTCCCAGGAGCAGGAACAGAAAATCGC
GGACCAGGAACTGGACGGCGTCATAGAGCTAATGCCGCCAACCACCCCCA
CGCCCAGCGAGAGTTCCAGTACCATTTCGGCCCCTAGTGAATCCTCCTTT
AGCGAGAAAATGGAGCACAGCTATATGCGAGATACGCCAGTGCGCAGCGA
TGTTCACAACGGCCTAACGCCCGCTAGGAACATTCTGGTCCGCCATCCGC
CACAGTGTCCCAGTTGCCACACATATCCGCCGCAGCACGAGGAGCTGTCA
GAGATTCAGCAGGCCCATGTGCCGCCCTATGATGAGGTAGTCGCCAAGGA
GGCAATGAATGAATGCGCTCGTATTGCAAATACGTTAAAGACAACAATTC
GGATGAGCAAGATTGGGTGGCGCGCGTTATTAATTTATTGGACGCCCATG
CAGGAATGGTTTTCGAGAAGGCTGCTCAT
FMO08650.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd1-RF | 3437 | CG8233-RF | 123..647 | 9..528 | 2440 | 98.5 | Plus |
| Rcd1-RD | 3497 | CG8233-RD | 123..647 | 9..528 | 2440 | 98.5 | Plus |
| Rcd1-RA | 3302 | CG8233-RA | 123..647 | 9..528 | 2440 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14151607..14151926 | 483..165 | 1490 | 98.4 | Minus |
| 2R | 25286936 | 2R | 14152846..14153001 | 164..9 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:06:14 has no hits.
FMO08650.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:00 Download gff for
FMO08650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8233-RA | 110..643 | 1..529 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:35 Download gff for
FMO08650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd1-RA | 114..647 | 1..529 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:37 Download gff for
FMO08650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd1-RA | 114..647 | 1..529 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:37 Download gff for
FMO08650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14151607..14151926 | 165..483 | 98 | <- | Minus |
| 2R | 14152846..14153010 | 1..164 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:35 Download gff for
FMO08650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10040351..10040515 | 1..164 | 97 | | Minus |
| arm_2R | 10039112..10039431 | 165..483 | 98 | <- | Minus |
