FMO08651.5prime Sequence
1139 bp (1045 high quality bases) assembled on 2010-06-21
> FMO08651.5prime
CAGTCGACATGTTGCGAATGATGCGAAGTTCCTCCTCCAGATGCTCTAGT
CTTCAGCAGAGCTTGTTGAAAAGTTCGACACGCTGTCTGGGTTCCGTTAT
ACCGGACCTTAAACTGAAGGACTTCCCGATCGCCAATGAGCCAATCCTGG
GATATCTCAAGGACTCTAAGGAGCGTAAGGCCCTCGAGCAGGCTCTAAAG
GGCACGGCCTCGAGTTGCGAAGACATCCCCATCGTGATCGGCGGCAAGGA
GTACAAGACGCCGGAGGTTCGATACCAGGTCATGCCCCATGACCACCAAC
ACAAGCTGGCCAGCTTCTACTACGCCGACAAGAAGCTTATCGAGAAGGCC
ATCAAAACGGCGGTGGAAACACAGCCCAAGTGGGACCGTGTGTCGATTGC
AGACCGTCTGAAGATCTGGGAGAAGGCAGCGGACCTAATGGCAACGACGT
ACCGCCAGGATCTCAACGCCGCCACCATGCTGGGTCAGTCAAAGACGGCG
ATTCAGGCGGAAATCGATTCAGCAGCGGAGCTTATCGACTTTATACGAAT
GAATGCCTATTTTCTGAAGGAGGTCACTAAATACCAGCCCATCAGCGAGA
ACATAAAGGTCACGAAGAACTCCTTGCGCTATCGTGGCATTGATGGCTTC
ATCGCCGCTGTCAGCCCCTTTAACTTTACGGCCATCGGCGGCAACTTGTC
CTACACGCCAGCTCTGATGGGAAACGGCGTGCTGTGGAAGCCCTCGGACA
CTGCCATGCTGTCCAACTGGATTATTTTCAAGATTATGCGCGAAGCGGGA
GTGCCCGATGGAGTCGTTAACTTTGTGCCCGCCGATGGGCCCGTGTTTGG
AGACACGATTACAGCCAGTCCCCACCTGGCAGCATCAATTTCACCGGCTC
TGTGCCAACCTTTAACCGCCTGTGGAAGCAGTGGGCAACAACATTGACAA
CTACGTGAACTTTCCTCGCTTGACTGGTGAGTGTGGCGGCAGAATTTCAA
CTGTTACATGCATCAGCCGACGTTGAGTCAGTGGTGACCTCCACGATACG
CTCAGCATTTGGTACTGCCGCCAGACGGTCCGCCTGCTCCGCGAATGTAT
GGTGCCGGGATTCCCTTTGCCACGATCAGGAAGGACCTG
FMO08651.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P5CDh1-RE | 2679 | CG7145-RE | 131..1267 | 9..1139 | 5265 | 98.2 | Plus |
| P5CDh1-RF | 2823 | CG7145-RF | 275..1411 | 9..1139 | 5265 | 98.2 | Plus |
| P5CDh1-RD | 2772 | CG7145-RD | 224..1360 | 9..1139 | 5265 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21839061..21839536 | 547..72 | 2380 | 100 | Minus |
| 3L | 28110227 | 3L | 21838492..21838680 | 906..719 | 880 | 98.9 | Minus |
| 3L | 28110227 | 3L | 21838740..21838913 | 720..547 | 870 | 100 | Minus |
| 3L | 28110227 | 3L | 21838262..21838434 | 1075..907 | 620 | 96 | Minus |
| 3L | 28110227 | 3L | 21839666..21839730 | 73..9 | 325 | 100 | Minus |
| 3R | 32079331 | 3R | 21879463..21879637 | 661..835 | 290 | 77.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:07:44 has no hits.
FMO08651.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:24:59 Download gff for
FMO08651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7145-RD | 224..1363 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:40 Download gff for
FMO08651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5CDh1-RD | 216..1355 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:27 Download gff for
FMO08651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5CDh1-RD | 216..1355 | 1..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:27 Download gff for
FMO08651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21838240..21838434 | 907..1096 | 94 | <- | Minus |
| 3L | 21838492..21838679 | 720..906 | 98 | <- | Minus |
| 3L | 21838741..21838912 | 548..719 | 100 | <- | Minus |
| 3L | 21839061..21839534 | 74..547 | 100 | <- | Minus |
| 3L | 21839666..21839737 | 1..73 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:40 Download gff for
FMO08651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21831340..21831534 | 907..1096 | 94 | <- | Minus |
| arm_3L | 21831592..21831779 | 720..906 | 98 | <- | Minus |
| arm_3L | 21831841..21832012 | 548..719 | 100 | <- | Minus |
| arm_3L | 21832161..21832634 | 74..547 | 100 | <- | Minus |
| arm_3L | 21832766..21832837 | 1..73 | 94 | | Minus |
