Clone FMO08654 Report

Search the DGRC for FMO08654

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:86
Well:54
Vector:pMK33-CFH-BD
Associated Gene/Transcriptdro3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08654.5prime Sequence

239 bp (239 high quality bases) assembled on 2010-06-21

> FMO08654.5prime
CAGTCGACATGGTGCAGATGATATTCCTGTTTGCTATCCTTGCTGTAATG
ACCATTGTCCTAATGGAGGCCAACACTGTTTTGGCACGTGATTGCCTATC
TGGAACTTTCGGAGGTCCTTGCTGGGCCTGGAGTGGAGAAAAGTGCCGCC
GTCTCTGCATTGAGGAGGGACATGTCAGTGGACACTGCAGTGGCGCAATG
AAGTGCTGGTGCGAAGGATGCGCAAGCTTTCTAGACCAT

FMO08654.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Drsl3-RA 360 CG32283-RA 31..251 1..221 1075 99.1 Plus
Drsl4-RA 323 CG32282-RA 37..224 28..215 460 83.6 Plus
Drsl2-RA 333 CG32279-RA 158..236 143..221 200 85 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3315026..3315246 1..221 1075 99.1 Plus
3L 28110227 3L 3315656..3315843 28..215 445 82.4 Plus
3L 28110227 3L 3314506..3314584 143..221 200 83.5 Plus
Blast to na_te.dros performed on 2014-11-28 23:24:17 has no hits.

FMO08654.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:24:57 Download gff for FMO08654.5prime
Subject Subject Range Query Range Percent Splice Strand
dro3-RA 31..251 1..221 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:56 Download gff for FMO08654.5prime
Subject Subject Range Query Range Percent Splice Strand
Drsl3-RA 31..251 1..221 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:48 Download gff for FMO08654.5prime
Subject Subject Range Query Range Percent Splice Strand
Drsl3-RA 31..251 1..221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:48 Download gff for FMO08654.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3315026..3315246 1..221 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:56 Download gff for FMO08654.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3315026..3315246 1..221 99   Plus