FMO08656.5prime Sequence
695 bp (695 high quality bases) assembled on 2010-06-21
> FMO08656.5prime
CAGTCGACATGGGACCAAGGCTCTATCCCGCTGCGATCCTCATCCTCCAT
TGCCTGCTGTTGCTCTTCCTCCAGGTGGACAGCAGAGGTAACCAGAACCA
CACCCAGATGGAAAGACAGCGTCATCTCCGAGCACACAATCTGCACAGGC
CTCCATACGATGGATACGATTGGCACAAACACTTTAACCGAGATGCCGAA
CCAAAGGCGACAGTTGCAAAGGAGAAAGAAGAGAAGACTTTCAAACACAG
ATCAGGACATTTAAAAAAGATGAAGCAGACAGCTAGGGATATTTCGAACT
GGAGCAGAGCTCGGAGCGCCTACCAAAAAGAGACGGCAGAGCTGGAGGAA
TGGGGTCGAAAGAAGAATATAACTGACAACGAACTGAAGTTATTCTTTGA
CGGTGAAATTTCTACCAAAGACAAGTACAGATTATTTGGGGACATTCAAA
CGGTTGTCCAGATCCTGAAAGAGGTGATAAAAAAGGGAGCTGTGACCGAA
AAAGAGAAAGCAATGATAACGCCGGAACTGAAACCATTGATCTTAAGATT
CGGCCGCATGTTTGAAAGGGAATTTGCCAAGAACACAAATGCCTTGGAAG
CCTTGCAGATCCTTGTTCATGAGGTTCAAAAATCGAACAGCCGGAACATG
AGACATAAGAGTGCTAAAAGGTCTCACGCAAGCTTTCTAGACCAT
FMO08656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34051-RA | 771 | CG34051-RA | 4..673 | 8..677 | 3350 | 100 | Plus |
| CG34051-RB | 768 | CG34051-RB | 4..670 | 8..677 | 3295 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19960404..19960595 | 494..303 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 19960167..19960350 | 677..494 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 19960854..19961027 | 181..8 | 870 | 100 | Minus |
| 2L | 23513712 | 2L | 19960659..19960781 | 304..182 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:50:44 has no hits.
FMO08656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:24:53 Download gff for
FMO08656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34051-RA | 1..672 | 9..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:19 Download gff for
FMO08656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34051-RA | 1..677 | 7..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:17 Download gff for
FMO08656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34051-RA | 1..677 | 7..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:17 Download gff for
FMO08656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19960163..19960350 | 494..682 | 98 | <- | Minus |
| 2L | 19960405..19960593 | 305..493 | 100 | <- | Minus |
| 2L | 19960659..19960781 | 182..304 | 100 | <- | Minus |
| 2L | 19960854..19961031 | 1..181 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:19 Download gff for
FMO08656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19960163..19960350 | 494..682 | 98 | <- | Minus |
| arm_2L | 19960405..19960593 | 305..493 | 100 | <- | Minus |
| arm_2L | 19960659..19960781 | 182..304 | 100 | <- | Minus |
| arm_2L | 19960854..19961031 | 1..181 | 98 | | Minus |
