FMO08658.5prime Sequence
885 bp (885 high quality bases) assembled on 2010-06-21
> FMO08658.5prime
CAGTCGACATGTCCGTGCGCGTGATCAACGACGAGTCCCACTTCCAGGCG
GAGTTGGCCCAAGCGGGCATTCAATTGGTTGTGGTGGACTTCACAGCTTC
GTGGTGTGGTCCCTGCAAGCGGATTGCGCCCATCTTCGAGACGTTTCCAA
CAAAGTACCCAAAGGCCATCTTCCTGAAAGTGGATGTGGACAAGTGCCAG
GACACGGCTGCTGGACAGGGCGTTTCGGCCATGCCAACATTCATCTTCTA
CAGGAACAGGACCAAGATCGATCGCGTCCAGGGTGCGGACGTCAATGGGC
TCGAGGCCAAGATCCAGGAGCACATCGGTACATCCGGTGGCGAGGAGGGG
GGCGAGGATTACGGGCAGGGATTGATGGAACTGAATACATTTATTTCGAA
GCAGGAGTGCGAGTGCCTCAACGAAGCTGATGACCACAACTTAAAGCACG
CCCTGGCCTCCGCCGGTGGCTACCTGCAGTCCGATTGCGATGAGCAGCTC
ATCCTGTCCATCACCTTTAATCAGGCTGTGAAGATCCACTCTTTGAAGTT
CAAGGCACCTTCGCACCTGGGTCCCAAGGATGTGAAGCTGTTCATTAACC
AGCCCCGCACGATTGACTTTGACATGGCCGAGTCCATGAACAGTGTGCAG
GATCTAAGCCTGGCTCAGAAGGAGCTGGAGAGTGGAGTGCCCGTGAATCT
GCGCTACGTCAAGTTCCAGAATGTGCAAAACATCCAAATCTTCGTGAAGA
ACAATCAGTCAGGTGGCGATGTGACGCAGATTGATTATATCGGCTTCATC
GGTTCCCCCATCATGACCACCAAGATGAACGACTTCAGCGAGTGCCTGGC
AAGAAGGCGAGAGCCACGCAAGCTTACTAGACCAT
FMO08658.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Txl-RA | 1123 | CG5495-RA | 164..1025 | 8..867 | 4245 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5766009..5766375 | 8..374 | 1835 | 100 | Plus |
| 3L | 28110227 | 3L | 5766432..5766716 | 374..658 | 1425 | 100 | Plus |
| 3L | 28110227 | 3L | 5766774..5766986 | 657..867 | 950 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:46 has no hits.
FMO08658.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:03 Download gff for
FMO08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Txl-RA | 156..1031 | 1..875 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:03 Download gff for
FMO08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Txl-RA | 157..1032 | 1..875 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:45 Download gff for
FMO08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Txl-RA | 157..1032 | 1..875 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:45 Download gff for
FMO08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5766002..5766375 | 1..374 | 98 | -> | Plus |
| 3L | 5766433..5766716 | 375..658 | 100 | -> | Plus |
| 3L | 5766776..5766993 | 659..875 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:03 Download gff for
FMO08658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5759102..5759475 | 1..374 | 98 | -> | Plus |
| arm_3L | 5759533..5759816 | 375..658 | 100 | -> | Plus |
| arm_3L | 5759876..5760093 | 659..875 | 97 | | Plus |
