Clone FMO08678 Report

Search the DGRC for FMO08678

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:86
Well:78
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG33977-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08678.5prime Sequence

308 bp (308 high quality bases) assembled on 2010-06-21

> FMO08678.5prime
CAGTCGACATGACAAATCTACAACGCTGGCTATTTTACGCATCGCTCTTT
GCGATTCCCTATCTCTCCGTTGTTTTGGGAACAGTGCAAACGCCACTAAC
TACCAAGTATTTCCTGCACATTCAGCTTTTACCACTTTTGCTCCTCGTGA
TTTTTGGAATATATTCCGTTTGGACTGTTCTATATAGAACTCTGACTTTT
AACGATTGTCCCGAGGCCGCCAAGGAGCTGCAGGATGAAATTCAGGAGGC
TCGCAAGGATTTGATAGCCAAGGGATTTCGGTTTCTAGATGCAAGCTTTC
TAGACCAT

FMO08678.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33977-RA 425 CG33977-RA 64..345 9..290 1395 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13402839..13402988 158..9 750 100 Minus
3R 32079331 3R 13402639..13402770 290..159 645 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 19:59:23 has no hits.

FMO08678.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:24:35 Download gff for FMO08678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33977-RA 62..343 9..290 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:43 Download gff for FMO08678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33977-RA 42..323 9..290 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:21 Download gff for FMO08678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33977-RA 64..345 9..290 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:21 Download gff for FMO08678.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13402839..13402988 9..158 100   Minus
3R 13402639..13402770 159..290 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:43 Download gff for FMO08678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9228361..9228492 159..290 99 <- Minus
arm_3R 9228561..9228710 9..158 100   Minus