FMO08687.5prime Sequence
392 bp (392 high quality bases) assembled on 2010-06-21
> FMO08687.5prime
CAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCGTTGCCTGC
GCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTACACTGCTCC
TCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGCCGTGGTAG
CTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTATCGCCAGG
AACTACAATGGAATCGCCGTTGCTCCTGTGATTGCTCCCGTTGCCGCTCC
TGTGGTGGCCAAGTACACTGCTGCTCCTTTTGCCTACGCTTCTCCTTTGG
CCTACTCCGCTCCTCTGGCTTACACTTCTCCATTGGCTTATAAAACTCTT
CCGGCTGCTGCTCCAGTTCTTCTGGCAAGCTTTCTAGACCAT
FMO08687.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14096-RA | 458 | CG14096-RA | 51..416 | 9..374 | 1830 | 100 | Plus |
| CG18294-RA | 507 | CG18294-RA | 55..330 | 9..284 | 1320 | 98.6 | Plus |
| CG12519-RB | 600 | CG12519-RB | 53..321 | 9..277 | 1315 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19466609..19466962 | 374..21 | 1770 | 100 | Minus |
| 3L | 28110227 | 3L | 19475194..19475457 | 284..21 | 1260 | 98.5 | Minus |
| 3L | 28110227 | 3L | 19472610..19472866 | 21..277 | 1255 | 99.2 | Plus |
| 3L | 28110227 | 3L | 19478373..19478568 | 41..236 | 725 | 91.3 | Plus |
| 3L | 28110227 | 3L | 19423849..19424044 | 41..236 | 710 | 90.8 | Plus |
| 3L | 28110227 | 3L | 19467481..19467687 | 31..255 | 685 | 88 | Plus |
| 3L | 28110227 | 3L | 19471890..19472096 | 255..31 | 685 | 88 | Minus |
| 3L | 28110227 | 3L | 19475971..19476177 | 31..255 | 685 | 88 | Plus |
| 3L | 28110227 | 3L | 19488045..19488308 | 41..313 | 670 | 83.9 | Plus |
| 3L | 28110227 | 3L | 19423125..19423224 | 238..139 | 335 | 89 | Minus |
| 3L | 28110227 | 3L | 19424757..19424836 | 151..230 | 295 | 91.2 | Plus |
| 3L | 28110227 | 3L | 19424852..19424908 | 288..344 | 240 | 94.7 | Plus |
| 3L | 28110227 | 3L | 19464433..19464518 | 235..150 | 205 | 82.6 | Minus |
| 3L | 28110227 | 3L | 19424828..19424887 | 246..305 | 180 | 86.7 | Plus |
Blast to na_te.dros performed 2014-11-28 19:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2849 | 169..94 | 147 | 69.7 | Minus |
FMO08687.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:24:27 Download gff for
FMO08687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14096-RA | 47..419 | 1..378 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:56 Download gff for
FMO08687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14096-RA | 47..420 | 1..379 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:11 Download gff for
FMO08687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14096-RA | 47..420 | 1..379 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:11 Download gff for
FMO08687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19466605..19466962 | 21..379 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:56 Download gff for
FMO08687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19459705..19460062 | 21..379 | 99 | <- | Minus |
