Clone FMO08688 Report

Search the DGRC for FMO08688

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:86
Well:88
Vector:pMK33-CFH-BD
Associated Gene/TranscriptTim13-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08688.5prime Sequence

302 bp (302 high quality bases) assembled on 2010-06-21

> FMO08688.5prime
CAGTCGACATGGCGGCTGCCAACATGGAGAAGGGTGAGCTGATGAACCAG
GTGAAACAACAGATCGCATTGGCCAATGCCCAGGAGATGCTCTCGAAGAT
GACGGAGAAGTGCTTCAAGAAGTGCATCCAGAAGCCGGGAAAATCACTGG
ACTCCACCGAGCAGCGTTGCATTTCGCAGTGCATGGATCGCTTCATGGAC
GCCTGGAATCTGGTGTCGCGCACCTATGGCAATCGTCTGCAGCGTGAACA
GTACAGGACCATGGAATCGTTGGAGATGACCAGCGCAAGCTTTCTAGACC
AT

FMO08688.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Tim13-RA 442 CG11611-RA 86..365 5..284 1385 99.6 Plus
CG34132-RA 535 CG34132-RA 163..346 25..208 260 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11774137..11774416 284..5 1385 99.6 Minus
2L 23513712 2L 7885665..7885781 25..141 210 78.6 Plus
Blast to na_te.dros performed on 2014-11-28 19:45:03 has no hits.

FMO08688.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:24:25 Download gff for FMO08688.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim13-RA 1..279 9..285 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:51 Download gff for FMO08688.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim13-RA 83..365 1..284 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:09 Download gff for FMO08688.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim13-RA 83..365 1..284 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:09 Download gff for FMO08688.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11774137..11774419 1..284 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:51 Download gff for FMO08688.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11767237..11767519 1..284 98   Minus