FMO08693.5prime Sequence
479 bp (479 high quality bases) assembled on 2010-06-21
> FMO08693.5prime
CAGTCGACATGGCCTTCAAGTTCTTCGCTGTTCTCGCCCTCATCTCGGCC
GCCAGTGCCGGAGTTCTTCCCGTCCAGCAGGTGTATCACGCCGCCCCCGC
CGTGGCCACCTACGCCCAAGCACCTGTCGCCGTTGCCCACGCCCAGCCGG
TTCTGACCAAGGCCACCGAGGAATACGATCCCCATCCCCAGTACAAGTTC
GCCTACGATGTCCAGGACTCCCTTTCCGGAGACTCGAAGAGTCAGGTTGA
GGAGCGTGATGGCGACGTGGTCCATGGCGAGTACTCCCTGATCGATTCCG
ATGGCTACAAGCGCATTGTCCAGTACACCTCCGACCCGGTCAACGGTTTC
AACGCCGTCGTCAACCGCGTTCCCCTGGATCACGTGAAGACCGTGGTGAA
GACCGTGGCTCCTGTGGCCGTGGCTGCTGCCCCTATCCCAGTGGCCTACC
ACCAGCACCACGCAAGCTTTCTAGACCAT
FMO08693.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Af-RA | 580 | CG1331-RA | 53..506 | 8..461 | 2270 | 100 | Plus |
| Ccp84Ad-RA | 735 | CG2341-RA | 67..436 | 9..378 | 1205 | 88.4 | Plus |
| Cpr5C-RA | 605 | CG4052-RA | 192..464 | 140..418 | 620 | 81.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6689676..6690118 | 461..19 | 2215 | 100 | Minus |
| 3R | 32079331 | 3R | 6692884..6693228 | 34..378 | 1170 | 89.3 | Plus |
| X | 23542271 | X | 5804931..5805203 | 140..418 | 595 | 81.7 | Plus |
| 3R | 32079331 | 3R | 6704277..6704571 | 78..378 | 465 | 77.7 | Plus |
| 3R | 32079331 | 3R | 6702374..6702668 | 378..78 | 420 | 76.7 | Minus |
| 3R | 32079331 | 3R | 6687088..6687275 | 168..355 | 340 | 78.7 | Plus |
| 3R | 32079331 | 3R | 6691265..6691450 | 362..177 | 315 | 78 | Minus |
| 3R | 32079331 | 3R | 6695740..6695935 | 378..183 | 275 | 76 | Minus |
| 3L | 28110227 | 3L | 4215945..4216123 | 177..355 | 250 | 76 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:24:42 has no hits.
FMO08693.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:24:17 Download gff for
FMO08693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Af-RA | 1..456 | 9..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:36 Download gff for
FMO08693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Af-RA | 47..506 | 1..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:54 Download gff for
FMO08693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Af-RA | 47..506 | 1..461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:54 Download gff for
FMO08693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6689677..6690118 | 19..460 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:36 Download gff for
FMO08693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2515399..2515840 | 19..460 | 100 | -> | Minus |
