FMO08701.5prime Sequence
1127 bp (994 high quality bases) assembled on 2010-06-29
> FMO08701.5prime
CAGTCGACATGCTTTGTTACCGAGAGTGTCAAAAAATATTGGAAAATGCA
CAAGAAAGTGCCGTTAGAGTCAAGCTGTTGGACTACCATTTAGTCAGGGA
TCTCAGTGCGATCGGTTACCTGGGGGATTACTACGCACTGACGCTAAGAT
ATTGCCATGAGGAAGAAGAAATCATTAGGGAAATTGAACTTTTTGTAAAG
GCTATGCCCCAGCAAAGTGCGGAATTGTCCAAAGAAAGTATTTTCCAAAA
GGAATCCTGGCTCTACGACACTCTTATAAAAAAACTGCAAGCTCTTTCCA
ACGTAAAGTGGAGTCCAAATTGCGTTTACAGCCGAAAAGACCTAATGGTA
CTGGAGAACATTAAGCTAAAGGGTTTCACATCAGCTGGATCCGCGGAACT
CAATGAGGTTTTCGTGAAACCATTAATTAAATCAATTGCCGCATTTCATT
CTGCCAGTTTGGTCTACGAACATCAGACAAAAACCAATATAGGTCACACC
TATGGTGATAACTTGTTAGAGATCACAGTAGACTCTGAAATTGCCTGGTT
CACTACAGGACTCTCGGCTGTTCTAGCTGTCGTTCGAAGTCTTGCAAAGT
ATCAGGGAAATAGGGAGCAATCTTTCATCGGTGACAAACTTATGGGCATA
ATGGAGACAATCTACGAGCAAGCGGCACCTTCAAAAAAATACAGGAATGT
CCTCTGTCATCGAGATATTTGGGCTGGTAACATTTTCTTTCCCCCGGAAA
ATTCTGGGCCTGCTTTACTGATTGATTTTCAGACTTGCCGTTACGCTCCC
CCAGCATCCGACCTCAATTTTTGTCTTTACATGAATTTGAGCTCCAGCAA
ACGCAAGCAAATGGAGAAGCAAGGCATTGATTTATACCACACATATTTGC
TGCAGACCTTTCGGATTTGGGCCTTGAGGAACTAGTGATTTCTAGTCAGA
GCTGCTGGATCCTACGAAGAGTTTCGGGTATCGGAGTGGTCACAGAGCGT
AGCTGCTACGTCGTAAAGGTCCCCACCGACTTCAATACAACGATTTAGTT
GTGGAACCGCCAGAAAGTGATCATGCTACTTGAAAACAAACCCGAATCCC
TACATATGAGATGCTTGGTGATGTCAT
FMO08701.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33509-RA | 1405 | CG33509-RA | 133..1245 | 9..1107 | 5015 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21084845..21085588 | 1034..298 | 3355 | 98.9 | Minus |
| 2L | 23513712 | 2L | 21086224..21086374 | 159..9 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 21085643..21085781 | 297..159 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:16 has no hits.
FMO08701.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:32:42 Download gff for
FMO08701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33509-RA | 129..1245 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:18 Download gff for
FMO08701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33509-RA | 129..1245 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:13 Download gff for
FMO08701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33509-RA | 129..1245 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:13 Download gff for
FMO08701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21084765..21085588 | 298..1107 | 96 | <- | Minus |
| 2L | 21085643..21085781 | 159..297 | 100 | <- | Minus |
| 2L | 21086225..21086378 | 1..158 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:18 Download gff for
FMO08701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21084765..21085588 | 298..1107 | 96 | <- | Minus |
| arm_2L | 21085643..21085781 | 159..297 | 100 | <- | Minus |
| arm_2L | 21086225..21086378 | 1..158 | 97 | | Minus |
