FMO08704.5prime Sequence
967 bp (930 high quality bases) assembled on 2010-06-29
> FMO08704.5prime
CAGTCGACATGAATCGCCTGCTGCTGCAGTGTCTAGTGACCACCATTCTG
GTCTACAAAGTGATTTCGGTGCCGACCAGCACGATGAGCACCAGCATCCA
GACGACCTCGGAGATTCCGCAGCAGGATGACGACGACGACGACTGGGAGG
AGGACGACGACTCTCTGGAGTCTGACGACGATGGCCGCGTCTACAAGAAT
CCTCGCAACTCACCCTCCACCGAGTGTCCACGCGACGAGGAGCAGGCCAC
GCTGCTCGGCCAGAAGTGCTTGAGGAAGTGCTCCTCCGACGAGGATTGCA
AGAGCAAGAAGAAGAAGTGCCTGTGCGACGGCGTCTGTGGCAATTCCTGC
ATTAAACCAGATCGCGAGTGCCCGGAACTAGCCCAGCCCAGCTTGGGTCA
GGTCACAGTGGCTGGACGCCACTTCGGAGCTCGCGCCTCCTATGCCTGTC
CGCACGGCTACCACGTTGTGGGTCTCCAGAGTCGTCTGTGCCAGGCGGAC
GGAAATTGGGCCGGAGCCGAGCCAGCTTGCAAAGCAAAATATTTACTGCC
TGAAGCCGCCGCAGATAGAGCATGCACGGAACTCGGCGCTGCCGGAACAG
GAAACCTTTGACCTGGACTCCACGGTTCAGTACCACTGTCACACCGGCTA
CGTGACCAATGGATTCCCGCGGGCCAAGTGCCTGGCTATTGATAACCTGG
CCAGCTGGTACGGCCCGGATATCCAATGCGAACCTCGATCCTGTGGCCAG
CCACCGGATCCGGCCTACGGATGGCATGCCGGCGAGTGCTACACGTACGG
ATGCAAGATCACCTACAACTGCAGAACCGGATACGAGCTGGTGGGCAAGC
ACGAGCGCTACTGCAGTCGGACGGATCGTGGACGCCCAAGAGCTGCCCCC
TGTGTCTCGGATACGCAAATGTAACACCACCATGACCTTTATCCGCCAGC
CTTTCTAAACCATTCTT
FMO08704.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10186-RD | 1440 | CG10186-RD | 190..1116 | 9..931 | 4460 | 99.1 | Plus |
| CG10186-RH | 5429 | CG10186-RH | 190..1090 | 9..907 | 4380 | 99.3 | Plus |
| CG10186-RG | 5683 | CG10186-RG | 444..1344 | 9..907 | 4380 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19515734..19516035 | 360..59 | 1510 | 100 | Minus |
| 2L | 23513712 | 2L | 19515168..19515359 | 733..542 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 19515427..19515600 | 532..359 | 870 | 100 | Minus |
| 2L | 23513712 | 2L | 19514950..19515107 | 890..734 | 725 | 98.7 | Minus |
| 2L | 23513712 | 2L | 19516441..19516492 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:16:28 has no hits.
FMO08704.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:32:39 Download gff for
FMO08704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10186-RD | 209..1143 | 1..931 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:22 Download gff for
FMO08704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10186-RD | 182..1116 | 1..931 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:19 Download gff for
FMO08704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10186-RD | 182..1116 | 1..931 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:19 Download gff for
FMO08704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19514931..19515107 | 734..907 | 97 | <- | Minus |
| 2L | 19515168..19515359 | 542..733 | 100 | <- | Minus |
| 2L | 19515419..19515598 | 361..541 | 98 | <- | Minus |
| 2L | 19515734..19516033 | 61..360 | 100 | <- | Minus |
| 2L | 19516441..19516498 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:22 Download gff for
FMO08704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19514931..19515107 | 734..907 | 97 | <- | Minus |
| arm_2L | 19515168..19515359 | 542..733 | 100 | <- | Minus |
| arm_2L | 19515419..19515598 | 361..541 | 98 | <- | Minus |
| arm_2L | 19515734..19516033 | 61..360 | 100 | <- | Minus |
| arm_2L | 19516441..19516498 | 1..60 | 93 | | Minus |
