Clone FMO08705 Report

Search the DGRC for FMO08705

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:87
Well:5
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG30259-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08705.5prime Sequence

455 bp (455 high quality bases) assembled on 2010-06-29

> FMO08705.5prime
CAGTCGACATGGGCAAAAAGGGTAAAGGAAAAGGCAACAAATTGGCCAAC
ATGTCCGAGGAGGAGCGGGCCAGGTATTTGCAAATGAGGGCCGACATGGA
GGAAGAGACGAGGCGGCGGAAAATGCAGCTCATTTCCATGTACATGAAGA
ACAAACTGAAAAGAGAGGATGCTTTTGGTCGACTCAATATGGCTAAAATC
AACCAGGAGTGGCGGAGCATTTTGCGCCAGGTGAAAATCCAGGAGCTGCG
CCGCGAAATCGTCGATGTGGAGTCTTTCTTTCAGGAGGCACTTAAGCGCA
AGGACCAGGTGATCCATCGCCTCATTGCTCACATAGAATCCACCGAGGAT
ATGTACGCCAATCTGCAGCAGTCACACATGGAGAATATCACCAGGATAGT
TGGTACGATTGGGATAACATCCTTAAAAATAACATTTGCAAGCTTTCTAG
ACCAT

FMO08705.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG30259-RA 1771 CG30259-RA 49..447 8..406 1980 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22703900..22704189 437..148 1450 100 Minus
2R 25286936 2R 22704258..22704399 149..8 710 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:25:46 has no hits.

FMO08705.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:32:33 Download gff for FMO08705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30259-RB 49..481 8..441 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:51 Download gff for FMO08705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30259-RA 49..457 8..415 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:48 Download gff for FMO08705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30259-RA 49..457 8..415 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:48 Download gff for FMO08705.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22703897..22704187 150..441 99 <- Minus
2R 22704258..22704399 8..149 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:51 Download gff for FMO08705.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18591763..18591904 8..149 100   Minus
arm_2R 18591402..18591692 150..441 99 <- Minus