FMO08706.5prime Sequence
1158 bp (1037 high quality bases) assembled on 2010-06-29
> FMO08706.5prime
CAGTCGACATGAAGTACTTGTGTTGGATCTTAGTGACCACGTCAGTGCTA
GGTCAATTCACCAAGCAACTTTACCGAAGCTTTTTGCAGGATAATAAACA
ATATAACATCATTGCCTCGCCTCTTTGCGTCGAGATTGGAATGAGCATGA
TCCTCATGGGAGCGGATGGAAATACAGCCAATGAACTGAGGACGGCTCTG
AATCTGCCAGAGGATAAAAAGAATGTAGCTACTATATATGATAAGCTTTT
GACTAAACTCGAAAGGGGCAAGAAGGTAGCCATTCTCCACTTGGCGAATC
GCTTGTTTGTCAACGAAACAATTGGTGTTAACAAGCGCTACAATAAACTA
GTCAATAAGCACTTTAGGGCCGAGGCAGAAGCCATTAAGCTGGCCGATCG
ATTGAAGGCAGCCTGGGCTATAAACGATTGGGTGCTCGACCAGACACTAG
ATAATGTGAAAGACATTATAATACCCAGTGACTTGACGCCCGATGAAAGT
GCGGTCATGATCAACGCAGCTTTCTTCAAGGGCTACTGGAAGACGCGATT
CGATAAGATGAACACCAAGCCCAAGGTATTCTATGTATCCAAAAGTTACC
AAGTAAATGTCAATATGATGTCGCAAGTGGGTCGATTTAAGATGCGTACT
TCGACCATAGACCAAATTATTGAGCTTCCATTTGCATACTCAAACCTTTC
AATGGTAATCGTTCTGCCCAAGGACAATGGGTCCCTAACTCAGGCAGAAG
CCACAATCGAAAGTTACCCTCAGATAGTTCTCACTGAAATGGATGTACAT
GTGCAGCTTCCTAAATTTAAAATCGATTTCCGCATGGAGCTCGTCGAAAC
TCTTAAAGCATGGGAATACAGGATCTCTTCATAGTTCGTCGGATATCAGC
GTCCTACTGAACCAGTTCTGGCACTAGAATCAGCCAAGTCGTACACAAAG
CCTTTATAGAGATTGACGAGATGCGGTTCGCAGATCCGCTTCTGCGAGCC
CCATTCGAGATTATCTGATTATGCGACTAGTGTGTTTACTTTACAGTCAA
TAGTCCCTTGTCTTAATGATTCCCGATGATGACAACTATATATTTCGTGA
CGAGTCGTGATCTTTGAGAAGAGCCATTCCATTGACCGGTTAACTAGCCA
AGCCTTTC
FMO08706.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28Da-RB | 1270 | CG31902-RB | 17..1159 | 8..1138 | 5205 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7888208..7889043 | 857..22 | 4180 | 100 | Minus |
| 2L | 23513712 | 2L | 7887997..7888150 | 1009..860 | 465 | 94.2 | Minus |
| 2L | 23513712 | 2L | 7887860..7887931 | 1086..1017 | 215 | 93.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:13 has no hits.
FMO08706.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:32:28 Download gff for
FMO08706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31902-RB | 9..1131 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:42 Download gff for
FMO08706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28Da-RB | 9..1131 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:57 Download gff for
FMO08706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28Da-RB | 9..1131 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:57 Download gff for
FMO08706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7887988..7888150 | 860..1017 | 94 | <- | Minus |
| 2L | 7888205..7889043 | 22..859 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:42 Download gff for
FMO08706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7887988..7888150 | 860..1017 | 94 | <- | Minus |
| arm_2L | 7888205..7889043 | 22..859 | 99 | <- | Minus |
