FMO08707.5prime Sequence
942 bp (942 high quality bases) assembled on 2010-06-29
> FMO08707.5prime
CAGTCGACATGCGAATACGTGGAGTATTGGCCATGTATCTGATGTTCCTC
CGCCTGCTACTCCACTGCACCACCGGTCACACATTGCCTCAGCGACACAG
CCCCCAGCACAAGAGAATGATCGATCCCCGTGAGCTCTTAAACGATTTTG
CTGCAATCAAGGAACCAGGAACCAGCGAAGTTGCTCCAAAGAATTCTGCT
AGATCAATTGCTTTGTACAATGCTGGTGGAGCGATGTCAGGATCAGGAGA
AGGAACCGCACCGGGACCGGGAACAGATAATTCCAAGTCGGCCTCCAATA
AGCAATGCGATCCGCAGGCAAAGTGCAATGTAAAGACGATCATAACCCCC
GGAGATCCCAAGCAGAAATCCTCAATGATCGCAATGAAAGCTGCACAGGA
TGCAAAGGCGGCCAGTGAAGCACAATCGGCCGCTGGCCAGGCTGCTGCCC
AACACATTAAGATGGAACTCGCTGAGAAGGCCTTTCAATCGGCCAAGGCG
GCCGAGGCTGCTCTGATGGGCAAACAGATGATGGTCGATCAACTGGAGCA
GGAAGTCCAGGAAGCTAGTGCCGTTGTCGAGGAGGAGTCCAATTCGATCC
ACCACACGGAGGCCAATATGAATGCCGCCGTTGAAGCTGTCAAAGTGGCC
GTGCAGCAATTCGAAACCATCAATGAACTGCAGAAGACCGCCAGGGAGTC
ACTGACCAATATTCAGACGGTGGCCATGGGATCGCAACAGGAAATGGCCG
CCAAGACACAGCTCCTGGAAGCGGCTCGCAACCGGATGGCCATGCTCCAA
AAGCAACTGGTGAGTGCCCTACGACGACTATGAGAAGACCAAGCAGGCCG
CCTACAAGGCTGCCTGTGCCGCCGTGGAAGCCAAACAGAGGGCTGGACCA
CCTGTACCACGTTACTATATTTTTGCAAGCTTTCTAGACCAT
FMO08707.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34459-RC | 1289 | CG34459-RC | 298..1213 | 8..924 | 4560 | 99.9 | Plus |
| CG34459-RB | 1096 | CG34459-RB | 105..1020 | 8..924 | 4560 | 99.9 | Plus |
| CG34459-RA | 1061 | CG34459-RA | 70..985 | 8..924 | 4560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16825735..16826572 | 86..924 | 4145 | 99.9 | Plus |
| 2R | 25286936 | 2R | 16825599..16825677 | 8..86 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 14260399..14260460 | 893..832 | 190 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:34 has no hits.
FMO08707.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:32:21 Download gff for
FMO08707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34459-RA | 61..986 | 1..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:47 Download gff for
FMO08707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34459-RA | 61..986 | 1..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:42 Download gff for
FMO08707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34459-RA | 63..988 | 1..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:42 Download gff for
FMO08707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16825736..16826575 | 87..928 | 99 | | Plus |
| 2R | 16825592..16825677 | 1..86 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:47 Download gff for
FMO08707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12713097..12713182 | 1..86 | 95 | -> | Plus |
| arm_2R | 12713241..12714080 | 87..928 | 99 | | Plus |
