FMO08708.5prime Sequence
950 bp (950 high quality bases) assembled on 2010-06-29
> FMO08708.5prime
CAGTCGACATGCCTTGCAGAGTCGGTGATATGGATTCTATTTCCGCACGG
TTTCAGCCCAGTGTAAGAATTGGCAATTGGGTCGAAGAAAATTGCCTTGA
AGAGGACAAAATAGTAAACTTTAAGAAACAACGCGATCGCGGCGAACTTT
TAGTGGAAAAGGCGCGCACTTTGTATGATAATTTCCACAAGGAGATCGTT
TTGGCTGCTCCCAAGCAAACCATTATATTCGGGGCTATTGTGCAATTAAT
GCCCATCCATATAAATATCAGTGATATGGATACAACCGATTTGAATGCCG
CTTTATCGGTGGTGATCAACGAAAAGGTGGTGCGAAAAAGCCAGTCAATC
AATGAGGATTGTGAGCTATCCGTGGCGCCCTCGAAGCGGCCTTGTGTGCG
AAACTCCTTTAAAATAGTCAGTGGAGATGGTCGGGATCGCACTGGTGAGA
ATATCAAATATGGACAGCGATTCCAGCTGCAGTGCATGGCCTCGGAACAC
GATCCCATAGTACTGTACAGTGGGCCCAAGCGGTGCAATCTGCAGCAGGG
TGTCCATGCCACCTATTTGTCGCACAAAAACGGGGAGCTCAATCTCAACC
TGGGACTTGTGCACCGCAGTAAATTATCATGCCCGGACAACGATATACCC
ATAGCATACACGAATTGGTTCTGCAGACATGTAAATCCAAAGCAGCGTTT
TGAAAGCGAAGGAGAAGATATACCTAGCAATTCCCCTTTGGTAATCGTGC
ATGCGACCACAAATCGAAATCTAGCTGCCGAGAATGTTCTGATCCAAACC
CTTTTTGGTCCCGAATTTCTGGTGTCCGTGCAAAACTATCGCAATATCTA
CAGGCATGAGATTTGGAAGAACGTATGGATGATTAGCAACGGACACCAGA
CTGGATCAAAGTCTGCAAATTCTACGTCTCACGCAAGCTTTCTAGACCAT
FMO08708.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34457-RB | 1267 | CG34457-RB | 88..1011 | 9..932 | 4620 | 100 | Plus |
| CG34457-RA | 1339 | CG34457-RA | 160..1083 | 9..932 | 4620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16670638..16671155 | 103..620 | 2590 | 100 | Plus |
| 2R | 25286936 | 2R | 16671374..16671580 | 726..932 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 16671214..16671318 | 621..725 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 16670485..16670581 | 9..105 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:07 has no hits.
FMO08708.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:32:18 Download gff for
FMO08708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34457-RA | 153..1089 | 1..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:40 Download gff for
FMO08708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34457-RA | 153..1089 | 1..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:54 Download gff for
FMO08708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34457-RA | 153..1089 | 1..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:54 Download gff for
FMO08708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16670478..16670580 | 1..104 | 97 | -> | Plus |
| 2R | 16670640..16671155 | 105..620 | 100 | -> | Plus |
| 2R | 16671214..16671318 | 621..725 | 100 | -> | Plus |
| 2R | 16671374..16671586 | 726..941 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:40 Download gff for
FMO08708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12557983..12558085 | 1..104 | 97 | -> | Plus |
| arm_2R | 12558145..12558660 | 105..620 | 100 | -> | Plus |
| arm_2R | 12558719..12558823 | 621..725 | 100 | -> | Plus |
| arm_2R | 12558879..12559091 | 726..941 | 98 | | Plus |
