FMO08711.5prime Sequence
1112 bp (961 high quality bases) assembled on 2010-06-29
> FMO08711.5prime
CAGTCGACATGAAGTCGACTGTTTGGCTACCTTTGTTGACCCTAATTTGG
AGGAGTGCCAGTGCCAACCCGATATTGGGGCTTTTCGATCCCGCCTGCCA
AGTTGTTAGGGGAGAATGTCCCAATAAAAACATATCCTTCTGGCTGTACT
CGAATTCCACCCGGGAAAACCCCATTCTGCTGGATCCCCTTGACCTTAAT
CCGTGGAACTTCCAACCGCCACGTCCCCTAAAGATACTCATCCATGGCTA
CACAGGTGACCGTGACTTTGCTCCCAACTCCTACATCCGTCCCGTGCTCC
TCGATCACGAAGATGTCTACGTGATCTCCATCGACTATGGACCACTTGTG
CGATATCCCTGCTACATCCAGGCAGTTCAGAATCTTCCCCTAGTGAGTCG
ATGCCTGGCGCAGTTAATCAACAACCTGGTCGATCGAGCTATTGTGGCAA
ATGACCAGATCCATCTGATAGGCTTCAGTTTGGGTGGTCAGGTGGCGGGG
CAGACGGCCAACTATGTGAAGAGAAAGATGAAGAGGATCACTGGTCTAGA
TCCTGCGAAGCCCCTCTTTATATTGGGACCAGATTCAAGAAGATTGGACA
AAGGAGATGCCGATTTTGTGGACGTCATCCACACGGATGTTTTCGGTCGG
GGATATCTGCGCGCTGCTGGTCATGTGGATTTCTACCCAAACTTTGGAGC
CAAACAACCTGGCTGCATGGAGGAGAACATGCAAGATCCAAGTAGCTGCA
ATCACGAGAGGGCTCCTCGCTTTTACGCCGAGTCCATCAATACCACTGTG
GGTTTCTGGGCACGGCAGTGTTCCGGTTGGTTGCTCCAACTCTTTCACTT
TGTCCCACAAAGGAGCTCAGCTCTACTGGGGCTATTCACGTCTCGGATGA
GTTGAGGGGCTCGTACTTCCTTCCAGACTGCAAGTTAAATCACCCTATGC
CCTCGAAAAATGCAGGTTGTGGACATAGAACAGACCTTGGCCAAGTTCAT
TTGATTTCGATTCCAAACGAATATCGACGATGACTTACGACACAGTTGTT
TTGGAGGCGTTCCTCGGACCTGGAAGCGGGAAGTGGTGTTCAAATTGGAT
ATGAAGGCGATT
FMO08711.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34447-RA | 1472 | CG34447-RA | 250..1341 | 9..1100 | 4850 | 97.2 | Plus |
| CG34447-RB | 1263 | CG34447-RB | 41..1132 | 9..1100 | 4850 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2418655..2419498 | 998..155 | 3735 | 98.2 | Minus |
| 2L | 23513712 | 2L | 2419551..2419665 | 154..40 | 575 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1360 | 3409 | 1360 1360 3409bp | 2581..2613 | 956..988 | 111 | 81.8 | Plus |
FMO08711.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:32:44 Download gff for
FMO08711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34447-RA | 244..1326 | 6..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:22 Download gff for
FMO08711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34447-RB | 38..1120 | 6..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:23 Download gff for
FMO08711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34447-RB | 38..1120 | 6..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:23 Download gff for
FMO08711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2418565..2419498 | 155..1088 | 96 | <- | Minus |
| 2L | 2419551..2419665 | 40..154 | 100 | <- | Minus |
| 2L | 2419734..2419767 | 6..39 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:22 Download gff for
FMO08711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2419734..2419767 | 6..39 | 97 | | Minus |
| arm_2L | 2418565..2419498 | 155..1088 | 96 | <- | Minus |
| arm_2L | 2419551..2419665 | 40..154 | 100 | <- | Minus |
