FMO08714.5prime Sequence
1162 bp (1054 high quality bases) assembled on 2010-06-29
> FMO08714.5prime
CAGTCGACATGTGGGAGCAGCTAGCGAGATATCGCAATCACTTTCTGCAA
CACGAAATCAAGGATGTGATGAAGCCGACCTCCATAAACAGCTTGCAGAC
TACGGAGTGGACGCATCATATGGAGAAACGGAATATTTGCAAGTGTATGC
CGCTCTGCTGCAATTCGACCTCGACGCACCTGGCGGATCGTGCTGAACTG
GCCTACGGCTGGTTTGCACTGCCCAAATTGCTCAAAGAACTGGATAGTGA
TGTTAGGCTGACCCATTGGAAGGCAGTCGTATCGTTGTCGGAATTCGTTC
TAAATCCACTGAATGCCCAAAGAGCTATCATTGAAATGGACCTTGTTAGA
AAGTTGAAGAATGCCTTTATGCGTATGAGATTGAAGCATCACAAGGAGGA
GCACCGGGAGGTGGAGATGTATCTAAGGATTTATAATATACTATCCCGCA
ATTTGGATGGAGCCGAAAATATAGCCAACCGCAAGTGCTTAAGGGTGGAG
TTTTATAAAATCATTAAGAACCAAGAGCCTATTAAGGATGAATTGGCTTC
AGAGATATTGCGAAATTTGACATGCAAGCCAAAAGTTCTGGGTATATTCC
TGGAGGATCCTGAAAACTTTTCCGCCTTAGCCGAGATCTTCAGACAGGAT
CCATGCCGTCCGCAATTCCCGTTGCATTTGTGGCATCACCTGTGTGACAT
GCTGGAAGTGGCACCCGATCGGGGCATCGAGCTGGGCCTCTTCGAGCTGC
TGCACTCGAGGATCCTAAACCGCTTGTCCAACTTCTGGGACATGAACACC
AAGGCATTTGCGCTGCTACTCTGCTGTGCTGAGGGTCAGCGGCGTTTCGA
TGCCGTGGATGGTGTAAAGCTGCTTTACGACGTCTTTGCCCAGCCCGATG
AGAATCCGCGAATGTTGCTGCCTCGCAGAATGGAGACTGGGAATATACGC
TTTGGCCCTGCTCAATGGCTCCATAGCAAGCGGGCATGTGGGCGCAGCAG
GAGTTCACCAACTGCGTGTTATGTGGGTCGTTCTCATGACTTCGACGACG
GATATTCCCCGCTGCAATTATTGCCTAAAGTGTTTCGGGGTGGGGGTAAT
GCCTGCATTACGCTTACTCATGCACTGGCTGCAGGACACTCTGCATGTTC
TGCTTGATGCTG
FMO08714.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13501-RA | 1583 | CG13501-RA | 51..1227 | 9..1162 | 5150 | 97.1 | Plus |
| CG13501-RB | 1630 | CG13501-RB | 109..1274 | 20..1162 | 5095 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22059375..22059861 | 1062..584 | 1915 | 97.1 | Minus |
| 2R | 25286936 | 2R | 22060257..22060510 | 354..101 | 1255 | 99.6 | Minus |
| 2R | 25286936 | 2R | 22059912..22060061 | 585..436 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 22060564..22060660 | 105..9 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 22060112..22060194 | 435..353 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:16 has no hits.
FMO08714.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:32:01 Download gff for
FMO08714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13501-RA | 51..1215 | 9..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:03 Download gff for
FMO08714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13501-RA | 51..1215 | 9..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:55 Download gff for
FMO08714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13501-RA | 51..1215 | 9..1154 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:55 Download gff for
FMO08714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22060259..22060505 | 106..352 | 100 | <- | Minus |
| 2R | 22060564..22060660 | 9..105 | 100 | | Minus |
| 2R | 22059272..22059859 | 586..1154 | 94 | <- | Minus |
| 2R | 22059912..22060061 | 436..585 | 100 | <- | Minus |
| 2R | 22060112..22060194 | 353..435 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:03 Download gff for
FMO08714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17947764..17948010 | 106..352 | 100 | <- | Minus |
| arm_2R | 17948069..17948165 | 9..105 | 100 | | Minus |
| arm_2R | 17946777..17947364 | 586..1154 | 94 | <- | Minus |
| arm_2R | 17947417..17947566 | 436..585 | 100 | <- | Minus |
| arm_2R | 17947617..17947699 | 353..435 | 100 | <- | Minus |
