FMO08717.5prime Sequence
1129 bp (802 high quality bases) assembled on 2010-06-29
> FMO08717.5prime
CAGTCGACATGGGAATAATTTGCCAAATTCTTTTTCACAACAACACGCAA
GGGGTTTTTTACGCGGGCCAAATGGTTGCTGGTCAAGTGACTCTGAGCAC
TGATAAGGCGATTCAAATCAAAGAAATGGCTTTGGAGCCGGGAACTAGGT
CCTACAATTTTGCTTGTCCAATTCCAATCAATTGTCCCTCATCGTTCGAG
GGGACTCATGGTCGTATACGTTATATGGTGGATGTCAATATCATTCACCC
GTGGAAGTACGACAGCATTTTCTCAAGAGCTTTCACCGTTATTCAAGTGA
TGGACATAAACACCTATAACTCTGTTTCACAGGTTCCCGTGCAGGCCAAG
ACTGAAAAAACCTTTGGGGTCTGGCCCTTCCGATCGGATCCTCTAACGCT
GGAGCTGAATTTGCCGCAGACTGGCTTTGTGCCTGGTCAGACGGTACCCG
CAAATGTTCTGATTGGTAACGAAAGCAAAATTCGGGTGCACGAAGTGAAG
GTTGGACTATCAATGATGATCACCTACTACAGTGATCTAAGTTCAGGTTC
CAAGTGCGAGCGCAAGTCCGTGGCCAAGTTAAAGGCAGATGGAGTTTTGA
GGAACTCCCGGAAAATGTACGACTTCCAACTGATGATACCCTCTACTCCG
CCTTCATGTTTCCATCTGTGCCGCATTATCAAGATCGGATACCAGATCGA
GGTTGTGGCCAAGGTGAAGGGCATGCATATCAATGGAACTCTGATAATGC
CGGTGACTATTTGTGGTGTTCCGATATCGCCGTCAGCGGTGAATATACGC
CGCAGAGCTCTGGGCCAGAGGCTCCACAACAATAGCTTTGACTTTGATTG
AGGGAGAGGGAGCTTTTGCTCCAGCTGCTCCCCCATATCCCTGGTCAGAG
GATCCACACTATCGCCACCGAACTACGCCGAGGCCATTGCATTCCCATAG
TGACTCTGAAAAAACAGTCATAGTCAGGAAATGCAACAGAATAGTCTTCA
AGCCGTCGTATCCTGTCTTCGATTTGTCTACTTCAACTGTAAGAAAAAAG
CAACGAAAGCGCTCTGGATTTGAGGCATGAGGCAGCTTTCTGAACTTTCG
TTTGGCCGGCCGGCCCAGCTAATGCTAAA
FMO08717.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18748-RB | 1359 | CG18748-RB | 80..1130 | 8..1057 | 4870 | 97.9 | Plus |
| CG18748-RC | 1509 | CG18748-RC | 345..1280 | 123..1057 | 4295 | 97.7 | Plus |
| CG18748-RC | 1509 | CG18748-RC | 80..199 | 8..127 | 585 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7786601..7787185 | 912..331 | 2730 | 99 | Minus |
| 3R | 32079331 | 3R | 7787242..7787457 | 334..119 | 1065 | 99.5 | Minus |
| 3R | 32079331 | 3R | 7787729..7787844 | 123..8 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 7786414..7786541 | 1041..913 | 365 | 90.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:16:23 has no hits.
FMO08717.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:31:50 Download gff for
FMO08717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18748-RB | 80..1133 | 8..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:16 Download gff for
FMO08717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18748-RB | 80..1133 | 8..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:15 Download gff for
FMO08717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18748-RB | 80..1133 | 8..1061 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:15 Download gff for
FMO08717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7786601..7787183 | 333..912 | 98 | <- | Minus |
| 3R | 7787244..7787452 | 124..332 | 99 | <- | Minus |
| 3R | 7787729..7787844 | 8..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:16 Download gff for
FMO08717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3612323..3612905 | 333..912 | 98 | <- | Minus |
| arm_3R | 3612966..3613174 | 124..332 | 99 | <- | Minus |
| arm_3R | 3613451..3613566 | 8..123 | 100 | | Minus |
