Clone FMO08718 Report

Search the DGRC for FMO08718

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:87
Well:18
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15539-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08718.5prime Sequence

1169 bp (1056 high quality bases) assembled on 2010-06-29

> FMO08718.5prime
CAGTCGACATGCCAACATTAAAGGACGTTGAGGAGGCCATTAGAGGATTG
AGACTCATTCAGTGGACTTATTCACTGCCAACTGCCGAAATGGCCAAGGG
AGTTCTTCAGGACATCCATCACAATACATCGCTGGATGGAATGCAGTGTA
TTACGATTGCCAGGCACATGGTAAATTATAAGGACTTTATTCGTGCCAAG
GAGTGGTTGATGGTAGGTTTAAAGATGTACGAGGCAGATGAAGAAATCGA
GTATATCTATTCCCAACTCGGAATGCCCTTGGTCGATTTTTACGAGCTTT
TCGTCGAGATTCAAGATGAACTTGGTTCTCGATACTTGGCCATGAGTGAA
CTGCAACTCGCTATTAAGAATTGGCCGGAAAAGGTCAGTCTGCAAAGAGC
CCTTTCTCGGCTAAAGATGAATATTCGCATTGGCAAGGAGCCAGCGGAAA
AGAAGAATAAGTCCAAAAGAGTCTATAAGAAATGCTGCAGTTCGGAATGT
CGACCTACCGCGAAACTTTATTGCTTGTACAAAACGACATCCTCGTATTT
CCTTCGATTGGCCCCTCTGAAGATGGAACTGCTGTCCCTCGATCCCTACA
TGGTGCTCTTTCATGATGTAGTTTCTGACAAGGACATTGTCAGCATTAGG
AACCTGACTAAGGGCAAACTTGCCCGAACCGTTACCGTGAGTAAGGACGG
AAATTATACAGAGGACCCCGATCGCACCACCAAGGGTACATGGCTAGTTG
AGAATAACGCATTGATCCAGAGATTATCGCAACTGACACAGGATATGACT
AATTTCGACATCCACGACGCGGACCCCTTTCAGTTTTGAACTACGGAATA
GGCGGTTTCTACGGCATCCACTTTGACTTTTTAGAGGATGCAGAATTGGA
CAACTTTTCGGATCGCATCGCCACTGCCGTGTTTTATTTGAGTGACGTGC
CCAAGGTGGGGCCACCATATTCCCGAAACTCGGACTCTCCGTGTCCCAAA
AGGGCTCAGCACTTCTGTGGTACAATCTGATCACAGGGCGATGGTGATAA
TAGAACAGCCCACCCAGCTTGTCCCACAGTGTGGTTCTAGATGGTCATGA
CCATGGATATGAAGACATTTTAGAGGCCTGTTGACAAGCATGCAGCCTCG
AACTTCGTGGCCGCGGCCA

FMO08718.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15539-RB 1565 CG15539-RB 372..1476 9..1103 5270 99 Plus
CG15539-RA 1615 CG15539-RA 422..1526 9..1103 5270 99 Plus
CG15539-RC 1562 CG15539-RC 372..1473 9..1103 5215 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30507064..30507509 451..895 2180 99.8 Plus
3R 32079331 3R 30506629..30506830 125..326 1010 100 Plus
3R 32079331 3R 30506887..30507015 324..452 645 100 Plus
3R 32079331 3R 30506460..30506575 9..124 580 100 Plus
3R 32079331 3R 30507659..30507807 938..1080 485 94.6 Plus
3R 32079331 3R 30507562..30507603 896..937 210 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:49:43 has no hits.

FMO08718.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:31:48 Download gff for FMO08718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15539-RB 366..1486 1..1113 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:39 Download gff for FMO08718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15539-RA 416..1536 1..1113 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:23 Download gff for FMO08718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15539-RA 416..1536 1..1113 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:23 Download gff for FMO08718.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30506454..30506575 1..124 96 -> Plus
3R 30506629..30506828 125..324 100 -> Plus
3R 30506888..30507015 325..452 100 -> Plus
3R 30507066..30507509 453..895 99 -> Plus
3R 30507562..30507603 896..937 100 -> Plus
3R 30507659..30507823 938..1094 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:39 Download gff for FMO08718.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26332176..26332297 1..124 96 -> Plus
arm_3R 26332351..26332550 125..324 100 -> Plus
arm_3R 26332610..26332737 325..452 100 -> Plus
arm_3R 26332788..26333231 453..895 99 -> Plus
arm_3R 26333284..26333325 896..937 100 -> Plus
arm_3R 26333381..26333545 938..1094 94   Plus