FMO08720.5prime Sequence
1055 bp (883 high quality bases) assembled on 2010-06-29
> FMO08720.5prime
CACTCGACATGGTCAAGCAAGTGGATTTTGCGGAGGTGAAGCTCAGTGAG
AAATTTCTCGGAGCTGGATCTGGTGGAGCGGTGCGCAAAGCCACCTTTCA
AAATCAGGAGATTGCAGTAAAGATATTTGATTTCCTTGAGGAAACAATCA
AAAAGAATGCAGAGAGGGAAATCACACATTTGTCGGAGATCGACCACGAA
AACGTTATCAGGGTGATCGGGAGGGCCAGCAATGGAAAGAAGGACTACTT
GTTGATGGAGTACCTGGAGGAGGGGTCCCTCCACAACTACCTCTATGGCG
ATGACAAGTGGGAGTACACCGTGGAGCAAGCGGTTCGCTGGGCACTCCAA
TGCGCCAAGGCCTTAGCATACTTGCATTCGTTGGATCGACCGATTGTTCA
CCGCGATATTAAGCCGCAAAACATGCTTTTATATAATCAGCATGAAGACT
TAAAGATTTGTGACTTTGGCCTGGCGACGGATATGTCCAATAATAAGACC
GATATGCAAGGAACATTGAGGTATATGGCTCCCGAGGCCATTAAGCACTT
AAAGTATACGGCTAAGTGTGATGTGTACAGCTTTGGAATAATGCTCTGGG
AGCTGATGACACGTCAATTGCCATATAGTCACTTGGAAAACCCCAACAGC
CAGTACGCCATTATGAAAGCTATCAGTTCAGGCGAGAAACTTCCAATGGA
AGCAGTAAGATCCGATTGCCCAGAGGGTATCAAGCAATTAATGGAATGTT
GCATGGATATAAATCCCGAAAAGCGCCCCTCTATGAAGGAGATCGAAAAG
TTCCTTGGCGAACAGTATGAAATCCGGCACTGACGAGGACTTTATCAGCC
TTGGATGAGATACCGTGCTGTGGTGACCTACATGTGGATTCATCCGGCAG
CAGGATATGCGTGTTGATTCGGCGACTTCATTGCCATCGATCCCTTGACT
TTTCCAAAGTGAACGGTAAGCCGAATGATTGGGAAAGACGTGTCCGAAAA
TGGCCAAGGCCGCGGTGGTTGAAACGGAAGTTCAGGCGGCCTGAAAGGAC
ACGGA
FMO08720.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Takl1-RA | 1323 | CG31421-RA | 34..1097 | 9..1055 | 4610 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20771786..20772110 | 682..358 | 1625 | 100 | Minus |
| 3R | 32079331 | 3R | 20772161..20772472 | 360..49 | 1560 | 100 | Minus |
| 3R | 32079331 | 3R | 20771126..20771446 | 989..680 | 880 | 92.9 | Minus |
| 3R | 32079331 | 3R | 20772527..20772568 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:49 has no hits.
FMO08720.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:31:45 Download gff for
FMO08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Takl1-RA | 26..1054 | 1..1015 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:11 Download gff for
FMO08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Takl1-RA | 26..1054 | 1..1015 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:55 Download gff for
FMO08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Takl1-RA | 26..1054 | 1..1015 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:55 Download gff for
FMO08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20771091..20771444 | 682..1021 | 92 | <- | Minus |
| 3R | 20771787..20772108 | 360..681 | 100 | <- | Minus |
| 3R | 20772162..20772470 | 51..359 | 100 | <- | Minus |
| 3R | 20772527..20772574 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:11 Download gff for
FMO08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16596813..16597166 | 682..1021 | 92 | <- | Minus |
| arm_3R | 16597509..16597830 | 360..681 | 100 | <- | Minus |
| arm_3R | 16597884..16598192 | 51..359 | 100 | <- | Minus |
| arm_3R | 16598249..16598296 | 1..50 | 92 | | Minus |
