FMO08721.5prime Sequence
674 bp (492 high quality bases) assembled on 2010-06-29
> FMO08721.5prime
CAGTCGACATGCATCTTCCGGCTCTTGATGACTTCTATCAGCGTCTTCTG
TTTCTGCTGCCGTTCGCCGCAAATTTCAGATCGACTGATTTCGACTACAA
ATCCCCGGAGAGGTGGCCGGAAAAATACCCAAATTGTGGTGGATCAGAAC
AGTCGCCCATTGCGATTAGCAGACGCAAGGCGATACCCCTTAACTTGCCG
CCTCTGATTTTCGCACTTTATGATGAGTTCTTCGATGAGCTGGTGACAAT
TAGGAATAGTGGACACACAGTGGAATTTAAGGTTCCGACGACGATCTATG
GCGTGAAGCCCTACGTAACAGGAGGTCTCTTGCGGGACTGCTACGATGCC
GAGGCCGTGCATTTCCATTGGGGATCCCCCGAGAGCAAGGGCTCGGAGCA
CCTGCTCAATGGACGCCGCTTTGATCTGGAAATGCACATAGTCCATCCGG
AACACAAAGTATTTAAACTTGGAAGGAGGCTGTTAAGTACAGCGAATGGC
GTTACAGTACTGGCGGTGCTCTTTAAGGTTGTTCGATCGGGGCCATTCCT
TTTATCACCCGGAATCAGGAATCCTTAATTCCCCCCCTCCATTTGGGAAA
CTTTATGGCCAGTTACCCTGGCAGGAAGGGCTACCCCTGGGGACCTTGGT
GGGATCCTTGGAAGGGAAAACTTT
FMO08721.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5379-RB | 1471 | CG5379-RB | 445..1110 | 9..674 | 2835 | 95.8 | Plus |
| CG5379-RA | 1115 | CG5379-RA | 89..754 | 9..674 | 2835 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22387059..22387323 | 536..269 | 1190 | 98.9 | Minus |
| 3R | 32079331 | 3R | 22387379..22387576 | 270..73 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 22388332..22388395 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:36 has no hits.
FMO08721.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:31:43 Download gff for
FMO08721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5379-RA | 68..695 | 1..627 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:43 Download gff for
FMO08721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5379-RA | 79..706 | 1..627 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:56 Download gff for
FMO08721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5379-RA | 79..706 | 1..627 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:56 Download gff for
FMO08721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22387379..22387576 | 73..270 | 100 | <- | Minus |
| 3R | 22388332..22388405 | 1..72 | 94 | | Minus |
| 3R | 22387059..22387321 | 271..536 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:43 Download gff for
FMO08721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18212781..18213043 | 271..536 | 98 | <- | Minus |
| arm_3R | 18213101..18213298 | 73..270 | 100 | <- | Minus |
| arm_3R | 18214054..18214127 | 1..72 | 94 | | Minus |
