FMO08723.5prime Sequence
1130 bp (1049 high quality bases) assembled on 2010-06-29
> FMO08723.5prime
CAGTCGACATGATAACGAGGCTCTACAACACCGAAGAGGATCCCGCCTAC
TGCTCGTTCATCTGGGGCTCGAATCTCACCAGCAGCGTCGACGTCCTGGC
TGCCAATGCCACGTCCGTCTTCAGCAGCGACCTGAGGGACGACTTCTATC
GGGATGTGGAGGATCCGCGGACGGAATCGCTGAGGGAATACTGCTATGGC
CTGGTGCTGCCCATCATCTGCGCCATGGGCATCATAGGCAACGTGCTCAA
CCTGGTTGTGCTCACCAGGCGCAACATGCGTGGCACCGCCTACATTTACA
TGCGGGCTTACTCCACCGCCGCCCTGCTGGCCATCGTGTTCGCCATTCCC
TTCGGTATCCGCATGCTGGTCCACAAGGATCGAGGACAGTGGGAGGAGTT
CGGCCCAGCCTTCTACACCGCCCACCTGGAGCTTTATCTGGGCAACGGCT
GTTTGGGCGTTGGCGTAATGATGTTACTAGTGCTGACCATTGAACGTTAC
GTGTCCGTTTGCCATCCAGGATTTGCTCGACCAGTGATGGGACCACCTGG
CGTTGTGGTATTCCTCACCTGCTTGGCCACGGTAATCGTCTATCTACCGA
GCATCTTTCGTGGCGAACTGATCAAATGCATCCTTGGATCGAGTGACGTA
TATGTATATTTGCGACGCGACAACACTATCTACCAGCAGACCATCTTCTA
TCGCGTCTACAAGATCATGCTGGAGGTGATCTTTAAACTGGTGCCCACTT
TGGTGATCGGTGGCCTCAACATGCGCATCATGATGGTCTACAGGCGGACC
TGTGAGCGCCGCCGCAAGATGGTGCTCAGTCGTCCGCATGCCCAGGGACA
TGGTCACGGACATGGGCACGGACATGGTCATGGACATGGACATGCACATG
GACACGGCTATTTGAAGACGACGATCCGCGAAAGTTCGCCGAGGAGCGGC
GCTTGTTCCTGCTGCTCGGCAGCACATCGATTTTGTTCCTGGTCTGCGTC
TTCGCGATGGCCATCTCACATGACGATCGCTCGAGTCTATCGAGCTTCCC
TTTCAAGTGTCCGGGCCAGCGCAATCTGCTGGAAATTGAAATACTACTCG
CTGAACCTTCTACACCTACTGCCGTCAGCG
FMO08723.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33639-RD | 4684 | CG33639-RD | 1167..2289 | 9..1123 | 5145 | 98 | Plus |
| CG33639-RC | 4799 | CG33639-RC | 1170..2292 | 9..1123 | 5145 | 98 | Plus |
| CG33639-RB | 2526 | CG33639-RB | 1047..2169 | 9..1123 | 5145 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18213435..18213905 | 1014..545 | 2230 | 98.7 | Minus |
| X | 23542271 | X | 18218453..18218607 | 306..152 | 775 | 100 | Minus |
| X | 23542271 | X | 18214465..18214616 | 457..306 | 760 | 100 | Minus |
| X | 23542271 | X | 18219890..18220034 | 153..9 | 725 | 100 | Minus |
| X | 23542271 | X | 18213951..18214045 | 550..456 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:13 has no hits.
FMO08723.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:32:07 Download gff for
FMO08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33639-RA | 1..1132 | 9..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:20 Download gff for
FMO08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33639-RB | 1037..2178 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:57 Download gff for
FMO08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33639-RB | 1037..2178 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:57 Download gff for
FMO08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18213310..18213899 | 551..1130 | 95 | <- | Minus |
| X | 18213951..18214044 | 457..550 | 100 | <- | Minus |
| X | 18214466..18214615 | 307..456 | 100 | <- | Minus |
| X | 18218453..18218606 | 153..306 | 100 | <- | Minus |
| X | 18219891..18220044 | 1..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:20 Download gff for
FMO08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18107343..18107932 | 551..1130 | 95 | <- | Minus |
| arm_X | 18107984..18108077 | 457..550 | 100 | <- | Minus |
| arm_X | 18108499..18108648 | 307..456 | 100 | <- | Minus |
| arm_X | 18112486..18112639 | 153..306 | 100 | <- | Minus |
| arm_X | 18113924..18114077 | 1..152 | 97 | | Minus |
