FMO08725.5prime Sequence
1187 bp (1052 high quality bases) assembled on 2010-06-29
> FMO08725.5prime
CAGTCGACATGTTGCTTTTGAAGCACCCGAAAACCAGCCAATCAATAGAA
ATCAATGAGTTTTGGCTCCGTGATCATTGTCGATGTGTGGAGTGTCTAAA
TTTCGAAACAAATCAGAGGCGATACGATGTCTTAGATCTACCAGCTGATA
TAATGCCACTAGATGTCAAATACGACGGGATGAATCTACAAGTGCAGTGG
AGTGATGCTCACAAGTCGAACTATGACCTGGACTTTATCTTCGACTCACA
GCTGGAGAGGTTGATAGGTCGGCGATCAAAGTCCACTAATCTGACACCAT
GGAATCGTAGCATTATCTTGCAAAACGAACGGCACTTACGATTCCCATTG
CCCCAGCTGGTTTCCAGTGATAACGAAGTCAGATCCCTGGTTGAATCTCT
GGTGCGTTATGGCATTGTCTTTATCGATGATGTGGCTCCCACCGCGAATA
TGACAGAATTGGCTCTGCGACGAGTTTTCCCCCTTATGAAAACGTTCTTT
GGCGAAATGTGGACTTTTAGCGATAACCCCGATCACGCGGACACCGCTTA
TACCAAACTTTACCTGGGTTCCCATACGGATAATACCTATTTCTGCGATG
CAGCCGGACTACAGGCTCTACATTGCATTGAGCACTCGGGATCGGGTGGC
GAAAATTTCTTTGTTGATGGTCTGCATGTGGTTCACGAACTGAAACGCCG
GTATCCCGCCGCTTATGATGTACTGTGCAGTGTCCAAGTTCCTGGAGAGT
ACATCGAAAAAGGGGAGCACCACTACCACACTGCCCCCATTATACAGGTG
GATCCACTGACTCAGGAATTTGTTCAACTCAGACTAAATGTATATGATCG
CGCCGTGTTTAATACCATCCCTCAAGCCGAAATGGCCGAGTTCTATGACA
GTCTTCGCCAGCTTTTGCTAATCGTCAGGGATAAGCAACAGCAGTGGGCT
CTCAAGCTATGTCCCGGCAGCATTGTTCTTTTCGATAACTGGAGAGTGCT
CCATGGTCGAGAGGCATAACCAGGAAGTCGTACCATGTTCCGGTTCCTAT
GTGCAACGCCACAGAATTTTCTCAGCAAGCTCGGAGTGGCTGGGATTATT
GGACGCCAGTCTTTTCTAAGAACATTCGTTGGGCGCCGGCCAGGGTAAAT
GGCCTATCATATCTAATACTATCTAATACCACCTAGC
FMO08725.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4335-RA | 1198 | CG4335-RA | 47..1138 | 7..1101 | 5265 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20406715..20407574 | 1059..199 | 4210 | 99.5 | Minus |
| 3R | 32079331 | 3R | 20407633..20407825 | 199..7 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:00:47 has no hits.
FMO08725.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:31:35 Download gff for
FMO08725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4335-RA | 17..1115 | 1..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:18 Download gff for
FMO08725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4335-RA | 42..1140 | 1..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:01 Download gff for
FMO08725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4335-RA | 42..1140 | 1..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:01 Download gff for
FMO08725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20406691..20407574 | 199..1084 | 99 | <- | Minus |
| 3R | 20407634..20407830 | 1..198 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:18 Download gff for
FMO08725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16232413..16233296 | 199..1084 | 99 | <- | Minus |
| arm_3R | 16233356..16233552 | 1..198 | 98 | | Minus |
