FMO08727.5prime Sequence
1167 bp (1013 high quality bases) assembled on 2010-06-29
> FMO08727.5prime
CAGTCGACATGTACGCCTCCTTGATGGACGTTGGCCAGACGTTGGCAGCC
AGGCTGGCGGATAGCGACGGCAACGGGGCCAATGACAGCGGACTCCTGGC
AACCGGACAAGGTCTGGAGCAGGAGCAGGAGGGTCTGGCACTGGATATGG
GCCACAATGCCAGCGCCGACGGCGGAATAGTACCGTATGTGCCCGTGCTG
GACCGCCCGGAGACGTACATTGTCACCGTGCTGTACACGCTCATCTTCAT
TGTGGGAGTTTTGGGCAACGGCACGCTGGTCATCATCTTCTTTCGCCACC
GCTCCATGCGCAACATACCCAACACATACATTCTTTCACTGGCCCTGGCT
GATCTGTTGGTTATATTGGTGTGTGTACCTGTGGCCACGATTGTCTACAC
GCAGGAAAGCTGGCCCTTTGAGCGGAACATGTGCCGCATCAGCGAGTTCT
TTAAGGACATATCCATCGGGGTGTCCGTGTTTACACTGACCGCCCTTTCC
GGCGAGCGGTACTGCGCCATTGTAAATCCCCTACGCAAGCTTCAGACCAA
GCCGCTCACTGTCTTTACTGCGGTGATGATCTGGATCCTGGCCATCCTAC
TGGGCATGCCTTCGGTTCTTTTCTCCGACATCAAGTCCTACCCTGTGTTC
ACAGCCACCGGTAACATGACCATTGAAGTGTGCTCCCCATTTCGCGACCC
GGAGTATGCAAAGTTCATGGTGGCGGGCAAGGCACTGGTGTACTACCTGT
TGCCGCTGTCCATCATTGGGGCGCTATACATCATGATGGCCAAGCGGCTC
CATATGAGCGCCCGCAACATGCCCGGCGAACAGCAGAGCATGCAGAGCCG
CACCCAGGCTAGGGCCCGACTCCATGTGGCGCGCATGGTGGTAGCATTCG
TGGGTGGTGTTCTTCATCTGCTTCTTCCCGTACCACGTGTTTGAGCTGTG
TACCACTTCTACCCAACGGCTGAGGAGGACTTCGATGGAGTTCTTGGAAC
GTGCTGCGCATCGTGGATTTGCACGAGCTTCCTAAACTCGTGCGTCAACC
CGGTGGCCTCTACTGCGGGTCGGGGTGTTCGGCAGCACTTTATCGGCTAC
TTCTGGCTGCATCTGGCGTCAAGGCGGCAGCCGCACTGGCGGGCAGCCTC
TCACGGCCACTGGAAGT
FMO08727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCHa2-R-RB | 2761 | CG14593-RB | 715..1872 | 7..1165 | 5320 | 98 | Plus |
| CCHa2-R-RA | 2320 | CG14593-RA | 715..1872 | 7..1165 | 5320 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6062879..6063197 | 7..325 | 1595 | 100 | Plus |
| 2R | 25286936 | 2R | 6064624..6064843 | 326..545 | 1100 | 100 | Plus |
| 2R | 25286936 | 2R | 6065875..6066065 | 713..903 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 6064902..6065072 | 544..714 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 6066173..6066279 | 907..1014 | 395 | 97.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:38:34 has no hits.
FMO08727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:31:32 Download gff for
FMO08727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14593-RA | 686..1850 | 1..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:02 Download gff for
FMO08727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCHa2r-RA | 709..1873 | 1..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:43 Download gff for
FMO08727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCHa2-R-RA | 709..1873 | 1..1167 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:43 Download gff for
FMO08727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6065875..6066068 | 713..907 | 99 | -> | Plus |
| 2R | 6066174..6066294 | 908..1027 | 95 | -> | Plus |
| 2R | 6064624..6064843 | 326..545 | 100 | -> | Plus |
| 2R | 6064904..6065070 | 546..712 | 100 | -> | Plus |
| 2R | 6062873..6063197 | 1..325 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:02 Download gff for
FMO08727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1950378..1950702 | 1..325 | 98 | -> | Plus |
| arm_2R | 1952129..1952348 | 326..545 | 100 | -> | Plus |
| arm_2R | 1952409..1952575 | 546..712 | 100 | -> | Plus |
| arm_2R | 1953380..1953573 | 713..907 | 99 | -> | Plus |
| arm_2R | 1953679..1953799 | 908..1027 | 95 | -> | Plus |
