FMO08728.5prime Sequence
938 bp (938 high quality bases) assembled on 2010-06-29
> FMO08728.5prime
CAGTCGACATGGCCAAGCCCCACTCGGATGCGGATGCCTCTGGCCTGGGC
TACGCCTACCAGCTGCCGTCCGGCGGCCTCCTGCTGCGCCTCAAATCTTC
CCTCTCACAGTTCAGCGATTTGTTCAGCGACTTCAGCAGGTACATCTCGC
CCGCCTATCATCACGATCGCTGCGAGCGATCCGTCCATATGCGACTCTAC
TCGATGCACAAGCGCGAGTTTGTCATGGTCTTCCTGGGATTCTTCACCTG
CTTCGGTCTGGGCATAGTCATCGGGCTGACGGGACCGCCCATAACCAGCA
CATCATCGCTGACCGCCCAGCAGATTCTGGCGAACACCTCGCTGGCGCAT
AGCCCAACGGTCCTGGGGAAGGGACCCTTCGCCATGAAGTCGCCGCTGAC
CACCACATATTCGCAGCAAATGTGGCTGATAGCCAAGCTGGTGACGGACA
ACAATGATGACGAGCGGTACGACAAGAGTTTCCAAGTGAGCGTCTCAATC
GATGGCATAAACGAGCAGCACAAGCCCCAAAGTGTCCTCGGATCCGGAGT
GGCTCACAACCGGACGCGGCACTTGGTCTGCGTACGGAACGACTGCGAGG
AGTTCACGGTGATGCATCTGGGATTCCTCGACTATGCCCACTATATTATC
ACTGTGCGCTTTTACGGCTTGGAGTCATTCCATCAGAAGTATAATATACG
CAGCATAACATTTTACTTCAAGACTTACAGTCCGGACTTCACGCAGATTG
AAATCTGGTTTAGGTGCATCTTTCTGCTGTTCACCTTCATTGTCATATGC
TGGTATGCCCACACCTTGCGCAAGTATCCAATCTATGATTGGTCCATTGA
GCAGCGATGGTTGTCGGTACTCCTGCCCCTGCTCCTTTTGTACGACAGTA
GGTGTTTCACCCGGATTAGTGCAAGCTTTCTAGACCAT
FMO08728.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13409-RA | 2087 | CG13409-RA | 177..1066 | 8..897 | 4450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22031273..22031724 | 459..8 | 2260 | 100 | Minus |
| 3R | 32079331 | 3R | 22030950..22031207 | 716..459 | 1290 | 100 | Minus |
| 3R | 32079331 | 3R | 22030618..22030740 | 920..798 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 22030816..22030896 | 797..717 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:18:40 has no hits.
FMO08728.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:31:31 Download gff for
FMO08728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RB | 180..1103 | 1..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:40 Download gff for
FMO08728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RA | 170..1066 | 1..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:39 Download gff for
FMO08728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RA | 170..1066 | 1..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:39 Download gff for
FMO08728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22030614..22030740 | 798..926 | 97 | <- | Minus |
| 3R | 22030816..22030896 | 717..797 | 100 | <- | Minus |
| 3R | 22030950..22031206 | 460..716 | 100 | <- | Minus |
| 3R | 22031273..22031731 | 1..459 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:40 Download gff for
FMO08728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17856336..17856462 | 798..926 | 97 | <- | Minus |
| arm_3R | 17856538..17856618 | 717..797 | 100 | <- | Minus |
| arm_3R | 17856672..17856928 | 460..716 | 100 | <- | Minus |
| arm_3R | 17856995..17857453 | 1..459 | 99 | | Minus |
