FMO08733.5prime Sequence
1161 bp (1031 high quality bases) assembled on 2010-06-29
> FMO08733.5prime
CAGTCGACATGTCGAAAAAGTGCTCCGTGCGATCGCTGAGCGACAGCGCC
TTGGCGGAGCTGGCCAATCTCTTGGTGTCCACCATCAGCTACGCGCAGTA
TGCCCCGGACGTGCAGCTGGACATTAACATCGTCATGGTGGAACTGAACG
AGTATCTGGCCCAGCTGGGAGCAACCCCCAATATATACCAGGATCTGCTC
AGGGTGATCCTCAGCTCGGACTATCTGGACGCCAACATGCGGTTCACCTG
CCTGCAGATGCTGCTCAACTGTGGCGTTACTTTCCTGATGACCGAGGTGT
TTCCCTTCAGCTACTACGAGAAGATCCTGCAGGTGATTGCAGCCCAAGGC
GCAGGACTGAGAGTGCTGAATATCAAGGGAATCTGGGTCAAGGAGGAGCA
CATGCACTACATGTACGACATAGTGAGGAAATGCAAGCAGCTGGTCAAGT
TGTATGTGCCCTATATTGCCAACGATCGGCTGCTGGAGGAGATCGGTAAC
TGCTGCACCCGTCTGCAGATCCTGGACATTTCCGGCGAGACCGACATCAC
GGAAATCGGCATCGATCTGCTGGCCAAGGGCGTGTGCTCACAATCACTAA
CCGTTGTGGATGTGGGCATGCCGGGCGAGGAGAACATCTGCTACTCGGAC
ATTGCCCTCATCCTGGAGCACTGTCCCCAGGTAGAGACCCTCTCCACTTA
CTCCTTTGTCGGCGCCTCCCTGAAGTTTATTCACGACAATGTCGACGATC
GCTTCAAGTGCCGACTGAAGTACATCCACGACACGGGCACGGATGAAGCC
ACCTTGCAGTGATCATGCAGACGTGCCCCAGGCTGGAGACCCTTTATCTG
GACTCGCCCAAGACGGGTAGCCTGAGGGCTCTTAGTACTCGCAATTTGCG
CAAATTGAAGATCTACAAATTTGTGGTGGCCGAGCTACTGCCTCTGCTGG
AGCGTCCGATTGGCAGGATCTGCGTCATCTCACCATGATCAAGGACTGGG
GAACCTTGAGCTGGGCAAGCTGGCTCCGCCTGGTGTCCCTCGCTCATGAT
TCTCGACTGCCAATATGATCGAACAGTCTGTCCTACGAATCGACCGCCCA
GTTCCAGCACCTGGAAGGTCTGGAAATCCTGGACCACGGCCATCTGACAG
GTTCTTTGCAG
FMO08733.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15412-RC | 1889 | CG15412-RC | 301..1455 | 6..1158 | 5240 | 97.5 | Plus |
| CG15412-RB | 1859 | CG15412-RB | 301..1455 | 6..1158 | 5240 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3374228..3375031 | 1131..330 | 3380 | 97.2 | Minus |
| 2L | 23513712 | 2L | 3375083..3375411 | 334..6 | 1645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:27 has no hits.
FMO08733.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:31:26 Download gff for
FMO08733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15412-RB | 297..1432 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:59 Download gff for
FMO08733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15412-RB | 297..1432 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:44 Download gff for
FMO08733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15412-RB | 297..1432 | 1..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:44 Download gff for
FMO08733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3374224..3375028 | 333..1136 | 97 | <- | Minus |
| 2L | 3375085..3375415 | 1..332 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:59 Download gff for
FMO08733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3374224..3375028 | 333..1136 | 97 | <- | Minus |
| arm_2L | 3375085..3375415 | 1..332 | 99 | | Minus |
