FMO08735.5prime Sequence
995 bp (995 high quality bases) assembled on 2010-06-29
> FMO08735.5prime
CAGTCGACATGGCAGCGCAGCTGAATCCATTCCGCAATGCCTTCCGGCTG
CCGTCCAAGCAGCGCATCAACTGGTTTCCCGGCCACATGACCAAGGGTAT
GCGGCAAATTCAGCAAAAACTACGAAATGTAGACTGCATAGTCGAGATTC
ACGATGCACGCATCCCATTGGCGGGCAGAAACTCCCAGTTCTTTGACACA
ATCACCGGAAGTGGTGTTAAACCGCATATTCTGGTGCTGAACAAAGTCGA
TCTGCTGGGCGCCAAACAGCAGAAGAGCGTGCTCCAGCAGCTGAGGAGAC
AGCAGCCCGAACTGCAGCACATCCTGTTCACCAACTGCAAGGATCAGCGC
AACAACGGCGTGCTGGACATCCTGCCCCTGGCAACGCGCCTCGTGAGCGA
GAGCAGTCGCTTCAATCGCACCCAAGCTGCCGAGCACAATCTGATGATCA
TCGGCGTGCCCAATGTGGGCAAGAGTTCCGTGATCAATGTGCTGCGAAAT
GTGCATCTCAAGAAGAAGAGCGCCGCACGCGTGGGTGCCGAGGCGGGTAT
AACTCGATCCGTCGGCGAACGCATCAAAATCCAAGAGAATCCGCCTGTTT
ACATGATCGACACACCCGGCATCCTCCAGCCCTCCATTAAGGATGATGAA
ATGGGCATGAAACTGGCCCTGGTGGGCTGCCTTCCCGATCATATTGTGGG
CGAGGATCTGATAGCCGACTATCTGCTGTACTGGCTGAATAGCCACCGCA
AATACGACTACGTGGAGATGCTAAAGCTCAGCTCCGGACCCAGTGACGAC
ATCAGCGCCGTGCTGGCGGAGTACGCTCATCGGGAGGAGCTATTCCACAA
GGTCAAGCAGTACGACGGACGCGTGAGGTGATGACAAATTTTATTGGCGG
CCGCGCGAAAGTTCATTCACTTCTTTCGCTCGGCCAGTTGGGTCACATGA
ATCTGGACGACCCAGTGGTTTCAGAGCAGCTTTCTAGACCATTCG
FMO08735.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17141-RA | 1099 | CG17141-RA | 73..1042 | 8..975 | 4755 | 99.6 | Plus |
| HP1c-RA | 986 | CG6990-RA | 884..985 | 975..875 | 440 | 97.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22746503..22747273 | 975..207 | 3660 | 99.5 | Minus |
| 3R | 32079331 | 3R | 22747327..22747527 | 208..8 | 1005 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:37 has no hits.
FMO08735.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:31:39 Download gff for
FMO08735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17141-RA | 24..1004 | 1..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:04 Download gff for
FMO08735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17141-RA | 67..1047 | 1..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:51 Download gff for
FMO08735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17141-RA | 67..1047 | 1..981 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:51 Download gff for
FMO08735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22746498..22747272 | 208..981 | 99 | <- | Minus |
| 3R | 22747328..22747530 | 1..207 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:04 Download gff for
FMO08735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18572220..18572994 | 208..981 | 99 | <- | Minus |
| arm_3R | 18573050..18573252 | 1..207 | 98 | | Minus |
