FMO08736.5prime Sequence
1143 bp (1035 high quality bases) assembled on 2010-06-29
> FMO08736.5prime
CAGTCGACATGAGTGCCACCGCCTGGAAGCCAGAACCCTCCTCCGAGGAT
AATGATGATGACCACAAGGAGTCAAAAAAAAAGCTGAAGAAGGAGGGGGC
AGGTGGATGGGCTTCGACCAGGCGATACGCCAGAATCCCCCTTAAAATAA
TGGCCGCTCTGGCCACCGTGTATGTGAGCATTCTTTCCTCGGAGCGGTAC
TTCTACTACTGGGTGCAGACCTCCATCGAAAGGACTGACATGCATGTATC
CGAGATCGATTTCCCAGCCGTGACCATCATTCCGATCAATTTGAGCATCC
TGAAAGCCGAGAAGCTCTCCAAGGCCTATAACTTGGTTCAGTCCGTGGTC
TGGCAAACACCGATGTCCGCCCGCCTCACGGATGAGAACTTCACGGAGTT
CTCCGAACTGGAAAACTGGAACGCGCAGAGCTGGGGAATCTACCAGGCGC
TGCAGATGAACTGCCAGCACTTCTTCACCGAGTGCCAGTGGCGTCGCAAG
GCGATGAACTGCTGTGACCTATTCCGACCCACCAAGACCTTCAATGGCTT
CGCCTTCGAGTTCAACTCACTGGTCTCCTCGGGAAGAGATGAAACGTGGC
CCTGGTCCGTGGCTTCATGCGGATCATATAGCGGACTCAATGTGAAGATC
AAACGGCAGCAGGGTCTGTATACGTTGAATACAATGGGGGTGATAGTGCA
CGAACCGACCCAGTTGCTGGGCATGAGCATTGACTATTCCTCAGAGGATC
GCATCGTGGTTCCGGTGGAACCACTTCATTTCACAGCCGAGTTGGATGTC
CGGGCACGTCCCGTTCAAATGCGTCGTTGTTACTTTGAGAATGAGATACC
AACGGGAAAGTCCCGGTCGGAGTGCATCTACAAGTGCCACGTCAACTACA
TCATCAGCAAGTGCAACTGCTCCTTGGAACTGCCGGTGAAGGCCACTCAG
GATGAGGACACATTGCGGCTGCAAGGAAAGCAACGGACGTAGAATTTGGC
GGTGTGAGGATCTGGCTGCTTCATCAGCACGACCTTCCTCTTTCATGAGC
AACATCATCGAAGAGTCCGTGATATGGTGTTCTCCACGGTGGATGGCGGG
TGCCTCTCAAGCGGTCACACCCAGGTACCCACGGTAACTAACG
FMO08736.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk30-RB | 1888 | CG18110-RB | 10..1137 | 9..1124 | 5180 | 98 | Plus |
| ppk30-RA | 1761 | CG18110-RA | 10..1137 | 9..1124 | 5180 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29669377..29669946 | 124..693 | 2850 | 100 | Plus |
| 3R | 32079331 | 3R | 29670006..29670156 | 689..839 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 29670208..29670370 | 838..998 | 700 | 98.2 | Plus |
| 3R | 32079331 | 3R | 29669158..29669273 | 9..124 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:29:45 has no hits.
FMO08736.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:31:38 Download gff for
FMO08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18110-RA | 1..1142 | 9..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:02 Download gff for
FMO08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18110-RA | 3..1151 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:11 Download gff for
FMO08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk30-RA | 3..1151 | 1..1138 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:11 Download gff for
FMO08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29669151..29669273 | 1..124 | 97 | -> | Plus |
| 3R | 29669378..29669942 | 125..689 | 100 | -> | Plus |
| 3R | 29670007..29670156 | 690..839 | 100 | -> | Plus |
| 3R | 29670210..29670408 | 840..1033 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:02 Download gff for
FMO08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25494873..25494995 | 1..124 | 97 | -> | Plus |
| arm_3R | 25495100..25495664 | 125..689 | 100 | -> | Plus |
| arm_3R | 25495729..25495878 | 690..839 | 100 | -> | Plus |
| arm_3R | 25495932..25496130 | 840..1033 | 96 | -> | Plus |
